suba logo
AT4G00660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNAhelicase-like 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 44948 Blast hits to 43709 proteins in 3097 species: Archae - 707; Bacteria - 21922; Metazoa - 6580; Fungi - 4983; Plants - 2686; Viruses - 56; Other Eukaryotes - 8014 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1945-MONOMERBioCyc:ARA:GQT-1946-MONOMERBioGrid:13333EC:3.6.4.13
eggNOG:ENOG410XRAZeggNOG:KOG0326EMBL:AF058919EMBL:AJ010460
EMBL:AL161472EMBL:AY080837EMBL:AY113985EMBL:CP002687
EnsemblPlants:AT4G00660EnsemblPlants:AT4G00660.1EnsemblPlants:AT4G00660.2entrez:828042
Gene3D:3.40.50.300GeneID:828042Genevisible:Q8RXK6GO:GO:0000932
GO:GO:0003723GO:GO:0004004GO:GO:0005524GO:GO:0006397
GO:GO:0006417GO:GO:0010494GO:GO:0010501GO:GO:0016032
GO:GO:0033962GO:GO:0051028Gramene:AT4G00660.1Gramene:AT4G00660.2
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF329HOGENOM:HOG000268797InParanoid:Q8RXK6
InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT4G00660KO:K12614
OMA:QFYAYVTPaxDb:Q8RXK6Pfam:PF00270Pfam:PF00271
Pfam:Q8RXK6Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q8RXK6PIR:T01230PIR:T51741PRIDE:Q8RXK6
PRO:PR:Q8RXK6PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194
PROSITE:PS51195ProteinModelPortal:Q8RXK6Proteomes:UP000006548Reactome:R-ATH-430039
RefSeq:NP_191975.2RefSeq:NP_849535.1scanprosite:PS00039SMART:SM00487
SMART:SM00490SMR:Q8RXK6STRING:3702.AT4G00660.1SUPFAM:SSF52540
TAIR:AT4G00660tair10-symbols:ATRH8tair10-symbols:RH8UniGene:At.25593
UniGene:At.67100UniGene:At.71300UniProt:Q8RXK6
Coordinates (TAIR10) chr4:+:274638..277438
Molecular Weight (calculated) 57690.20 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.44
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)