AT4G24200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription elongation factor (TFIIS) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription elongation factor (TFIIS) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); Has 1174 Blast hits to 562 proteins in 174 species: Archae - 0; Bacteria - 342; Metazoa - 163; Fungi - 176; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12556927..12559929 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107589.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||
| Length | 1000 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLEDFFTLT EIKDGLTVTS RVEELVSVMQ SNKDSVLKNS GDAFRQWTAV ASTIAATKNR DCLDVFVNLD GLVYLSSWLA EAQMLDNDSV DRSVEESILA 101: LLEAVENLGV DSSKLVSSGL WVAVKKLVDH GSSRVQDQAR KLFGSWKDKD DYDHSEHDSE SCNKIHEDEM RVVAASIESS GQKSAVTLCS MQSTSEKHCP 201: EIADEALLSG CSEGNIPDQD KGLGLQNDKA GFVSNVNSHC SNSMTETFNG SCTDDIMKEV QEKLSVKEKS SMGETSGPTT FGTMPTGSSS LLYLERDSAE 301: GPSNAPLDAE IPKEKQMANY FLEKLGEAGT SSAAGHVAVS SDSIVASMEL EKNSLLQSSL DSNEVSKNVS GTICGSHDVS VAHNSKQVSS LTHMTDNQDS 401: DNSSRLSGGL GRSRKFESDN LTGLADNEGK DDMGHSDKKR RVKRRKKRIS SRSMTISQRL GAIDKTTTDI DLGILDALEV ATKVAQEVAR EVDSGEPSHS 501: SSEELSDESG QSGSQYSRDD DVHTGSPSKG LSVTENHSFE EPHVGDDDLM DEKDDKPESG DVEERHLATA AKSEVGREKS PCGFDLNQDI CPDETDVIMS 601: STSTTPAPMS VSFSVSSSAM PAAAPWHLER SLSGKGSAAT SVFHSALPHK VPSGDLREKQ VISRGIDLNV AEVGDDQVED LTPWKQFPFS SSNSRGGESS 701: HEASLRGSSK FNLDLNCMNE DDEMPPPSES KMETRLFLSH NGQQSASPVS SSSVAQQSGK EVNFDLNDRP QFFIDSRDQG PYYGRHPWST ASYGGHKLEE 801: PGISILGTKV EADRKDSVPQ MASFLSNGKS LEPATGLHMG RTGNSLGLAP GVSFSPAPMY GYNGLTGPPG LSMSSPMYVP GTAIPYMVDS RGTPVMMPQI 901: IGSAPYVQPP FPQQHMFMSL AGGSPSTNGS MRPNFDQNSG FGLEIGNRES LNLRQFLSPS QSGAMGEHSG ANVEPSSSSS ISIGGKRKEP EPRWEFPPWR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)