AT5G52530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dentin sialophosphoprotein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
dentin sialophosphoprotein-related; Has 931 Blast hits to 739 proteins in 178 species: Archae - 6; Bacteria - 85; Metazoa - 392; Fungi - 124; Plants - 76; Viruses - 5; Other Eukaryotes - 243 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21318215..21320882 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92423.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||
| Length | 828 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSNKGAIIP PELPWKPVAK GSRSSTRRGK KLVKRVAASD IESEDKSSTH TLVAGESKRP KLGVSVLGQH FVERVEHVPI KKRIFVVSSP SPSPSSSKRS 101: SAQREGSEHK AQINHVLPVS RLNPNLVSDV RDEKPDYSVH DFSGIKILAD AACSTDVSND FAPAVDRLPA EEFAVQLQDT STISTHVEGN DSSAGTADVS 201: HTAVDSGDQS GQGKSNIVAP QKHPLTNLCN ELADEQSVEH SRVTSGGIIA PKKTCIALSN ESSTERPKDN VEASESEPLA PDSGAVTVSE KLSADEPTEK 301: NNEGLKDVKF LWDLNIPCDV EDEASRRDEE GEITESIAPK GSEPFDGSKH SMDGVIASDE HTKFSSPSKP NDEAAATNDK DCQSGYDSQF EDGELREPYP 401: WEENEEVEQL DYGSEPEDER FYSMGSEKGI LTDENFSHVK CESGDALRVG QANEGSDIEK QAVVNMSDSH PKKGSSSPSR SFGSKPYKEV PSHDAIQRRR 501: PDTYEEVSTG PDRFARRDDR SGMRMRNRSP QRGYFSGWDS KRRFSPPNYK DGSYGSGRPW HKRMADDRGM MNGFDESGSG QGPGPEPEPE GYVRRQFSNG 601: GYRGRFKRFP DGGDRKFRGP YTDTNQFSGR MHNRMSGNRR ERGGSPVVRR LHHPQSESRS RSRSPVLWNG RNRSPPPPPG GFRADERMTE RVRLPFQKRF 701: PADQEMGYMS PPRNRMSSPR FFEGRNNGAG ENYNSFRERK FRPGQRFYVG NSMRRPNSDN NNLRPFIPNR RFDNPEESTG GNRFEMTQQR RTRRSETTED 801: GGDVIRRFKF NEEQQSVVVA NDNNNKES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)