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AT4G30100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G19120.1); Has 5876 Blast hits to 5615 proteins in 1104 species: Archae - 176; Bacteria - 1754; Metazoa - 1255; Fungi - 973; Plants - 640; Viruses - 179; Other Eukaryotes - 899 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1112eggNOG:KOG1801EMBL:AL078464EMBL:AL161576
EMBL:CP002687EnsemblPlants:AT4G30100EnsemblPlants:AT4G30100.1entrez:829133
Gene3D:3.40.50.300GeneID:829133GO:GO:0009506GO:GO:0016787
Gramene:AT4G30100.1hmmpanther:PTHR10887hmmpanther:PTHR10887:SF359HOGENOM:HOG000084788
InterPro:IPR027417KEGG:ath:AT4G30100KO:K10706OMA:AIKCANT
Pfam:PF13086Pfam:PF13087PhylomeDB:Q9SZW3PIR:T08986
Proteomes:UP000006548RefSeq:NP_194739.1STRING:3702.AT4G30100.1SUPFAM:SSF52540
TAIR:AT4G30100UniGene:At.31859UniProt:Q9SZW3
Coordinates (TAIR10) chr4:+:14714191..14719335
Molecular Weight (calculated) 145633.00 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.56
Length 1311 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASEGKLLFD LNELPTEDDD GIDNVNFNQQ PQVTIPSSNP SSSALLATPS SSQDNVNNNR VFSHASTVSG FQPFVRPVAA QHTDVAVERK VDEGSLEEAK
0101: VTSLKVPNDV GAPEREEGEW TESEVPANDN VHSSSDYSTV TEKDNGTLGL DINSDSALQK KNVNHISESS GKDSGSIDSP QEQGLTVRPR ETKGVEASHA
0201: IKCANTTVKR KMDHQKETML GKKRHRQTMF LNLDDVRQAG PIKTTTPRRQ NFPQPVVTRT VRESRAGPPT AEQAGGVPGH VVYRDQKPID IPNGGIHPET
0301: SEPKLESNGE SQSGSAGKTR RMNGEAGPSA EATSTSVSRQ GSWKQPINSR QLKSGHSSNR QVPLCSQTSA DSKFGNKKFT SFKKQATNST QYQDTSVERL
0401: LREVTNEKFW HHPEDTDLQS VPERFESMDE YVRVFEPLLF EECRAQLYST WEELAEANSY MKVRIKFIER RERGWYDVIL NSVNECKWAF KEGDVAVLSN
0501: PVPESEGEHD DVGRVAGTVR RYIPVDTRDP HGAILHFYVG DAYDSGSKID DNHILRKLKP KEIWHLTVLG SIATTQREYV ALHAFSQLNP QMQNAILKPS
0601: PEQFPNYGEQ TPTVPDCFTP SFAGHLHRSF NAPQLAAIHW AAMHTAAGTS SGVKRQDPWP FTLVQGPPGT GKTHTVWGML NVIHLVQYQQ YYTSLLKKLA
0701: PESYKQVNES SSDNIVSGSI DEVLQNMDQN LFRTLPKLCA KPRMLVCAPS NAATDELLSR VLDRGFIDGE MRVYRPDVAR VGVDTQTKAA QAVSVERRSD
0801: LLLAKSREEI LGHIHNLRVR DAQLSQDIAG LKRELTAAAF ANRSQGSVGV DPDVLMVRDQ TRDAMLQRLS AVVEARDKDL VEMSRLLIVE GKFRAGTSFN
0901: LEEARASLEA SFANEAEIVF TTVSSSGRKL FSRLTHGFDM VVIDEAAQAS EVGVLPPLAL GAARCVLVGD PQQLPATVIS KAAGTLLYSR SLFERFQLAG
1001: CPTLLLTVQY RMHPQIRDFP SRYFYQGRLT DSESVSTAPD EIYYKDSVLK PYLFFDISHG RESHRGGSVS YENIDEARFC VGVYLHLQRT LKSLGGGKVS
1101: VGVITPYKLQ LKCLKIEFGN ALSQDELQEI YINTVDAFQG QERDVIIMSC VRASNHGVGF VADIRRMNVA LTRAKRALWV MGNASALMKC EDWAALITDA
1201: KARNCFMEME SLPKDFPVPK VPSFIPKAPN ARGFRSGGPR TRSIDMHPES RSGTPSEDDK KLSTTTFPRN GNSRRENSVD DSDPPGDRYR DAWQHGIQRR
1301: QNFGRPLGRR D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)