AT4G30100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G19120.1); Has 5876 Blast hits to 5615 proteins in 1104 species: Archae - 176; Bacteria - 1754; Metazoa - 1255; Fungi - 973; Plants - 640; Viruses - 179; Other Eukaryotes - 899 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14714191..14719335 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 145633.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||
| Length | 1311 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASEGKLLFD LNELPTEDDD GIDNVNFNQQ PQVTIPSSNP SSSALLATPS SSQDNVNNNR VFSHASTVSG FQPFVRPVAA QHTDVAVERK VDEGSLEEAK 0101: VTSLKVPNDV GAPEREEGEW TESEVPANDN VHSSSDYSTV TEKDNGTLGL DINSDSALQK KNVNHISESS GKDSGSIDSP QEQGLTVRPR ETKGVEASHA 0201: IKCANTTVKR KMDHQKETML GKKRHRQTMF LNLDDVRQAG PIKTTTPRRQ NFPQPVVTRT VRESRAGPPT AEQAGGVPGH VVYRDQKPID IPNGGIHPET 0301: SEPKLESNGE SQSGSAGKTR RMNGEAGPSA EATSTSVSRQ GSWKQPINSR QLKSGHSSNR QVPLCSQTSA DSKFGNKKFT SFKKQATNST QYQDTSVERL 0401: LREVTNEKFW HHPEDTDLQS VPERFESMDE YVRVFEPLLF EECRAQLYST WEELAEANSY MKVRIKFIER RERGWYDVIL NSVNECKWAF KEGDVAVLSN 0501: PVPESEGEHD DVGRVAGTVR RYIPVDTRDP HGAILHFYVG DAYDSGSKID DNHILRKLKP KEIWHLTVLG SIATTQREYV ALHAFSQLNP QMQNAILKPS 0601: PEQFPNYGEQ TPTVPDCFTP SFAGHLHRSF NAPQLAAIHW AAMHTAAGTS SGVKRQDPWP FTLVQGPPGT GKTHTVWGML NVIHLVQYQQ YYTSLLKKLA 0701: PESYKQVNES SSDNIVSGSI DEVLQNMDQN LFRTLPKLCA KPRMLVCAPS NAATDELLSR VLDRGFIDGE MRVYRPDVAR VGVDTQTKAA QAVSVERRSD 0801: LLLAKSREEI LGHIHNLRVR DAQLSQDIAG LKRELTAAAF ANRSQGSVGV DPDVLMVRDQ TRDAMLQRLS AVVEARDKDL VEMSRLLIVE GKFRAGTSFN 0901: LEEARASLEA SFANEAEIVF TTVSSSGRKL FSRLTHGFDM VVIDEAAQAS EVGVLPPLAL GAARCVLVGD PQQLPATVIS KAAGTLLYSR SLFERFQLAG 1001: CPTLLLTVQY RMHPQIRDFP SRYFYQGRLT DSESVSTAPD EIYYKDSVLK PYLFFDISHG RESHRGGSVS YENIDEARFC VGVYLHLQRT LKSLGGGKVS 1101: VGVITPYKLQ LKCLKIEFGN ALSQDELQEI YINTVDAFQG QERDVIIMSC VRASNHGVGF VADIRRMNVA LTRAKRALWV MGNASALMKC EDWAALITDA 1201: KARNCFMEME SLPKDFPVPK VPSFIPKAPN ARGFRSGGPR TRSIDMHPES RSGTPSEDDK KLSTTTFPRN GNSRRENSVD DSDPPGDRYR DAWQHGIQRR 1301: QNFGRPLGRR D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)