AT3G03140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 426 Blast hits to 278 proteins in 85 species: Archae - 0; Bacteria - 14; Metazoa - 209; Fungi - 70; Plants - 86; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:724348..727093 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87389.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.51 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.03 | ||||||||||||||||||||||||||||
| Length | 769 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPGSGAVD WTVGSIVWVR RRNGSWWPGR ILGQEDLDST HITSPRSGTP VKLLGREDAS VDWYNLEKSK RVKPFRCGDF DECIERVESS QAMIIKKREK 101: YARREDAILH ALELEKEMLK REGKLVPEKA RDDSLDATKE RMAIVRVQDT SNGTRESTDY LRTNHVGDVM HLLRDKEEDQ PSCEDEAVPR MRGLQDFGLR 201: TASSKRKISC SNGPDTSFKY LARSNSSASS SGDHSMERPI YTLGKEKTKS RAEAKRTKYM FTPSESNDVS DLHENLLSHR DAMHSSFAGG DTRYSDYDPP 301: NFLEDMESDY SESETDSSDM EEDTDDDIPL LSGAGRHSER RNTFSRHTSG EDESTSSEED HYESSISGDS SYLYSQNPNN EASTVSNWQH KGKRNFRTLP 401: RRSARKRKLH RNRLEDGRYC EYKRRAFGQK PMGYGLDFNG INDMSDGTDD TDPNERQFGD RMIVPGDDYQ LSNVVASRCK NIYSHDMLDW DDDPWEGRIG 501: MKKRGEEKLE GLGQEFDVSE RHFGRKTYSS LMDVDLEVRG SYQKGPVPIV SLMSKLNGRA IIGHPVEVEV LADGSSESYI QTIDYFGNET TYQDKTFLLP 601: SAWKTARRSN SRVPRLQPFS SSVEADDDAT YDYSLADQGR KPLVKKLGLG HFSNDDNSVR RNSSLRIPRP PAERKQQHQQ QQKKLLKNTN ATASQKTRAL 701: SSFSGEQGHN GMKASRDRTH ELSNRRVLPG PPTVACIPVK LVYSRLLEKI NRPPSKPTAK AFNERRRVQ |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)