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AT2G19390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH9MeggNOG:ENOG41102UKEMBL:AC003058EMBL:CP002685
EnsemblPlants:AT2G19390EnsemblPlants:AT2G19390.1entrez:816458GeneID:816458
Gramene:AT2G19390.1hmmpanther:PTHR31115hmmpanther:PTHR31115:SF3HOGENOM:HOG000241158
KEGG:ath:AT2G19390ncoils:CoilOMA:RTMDVDRPhylomeDB:O64572
PIR:T01287Proteomes:UP000006548RefSeq:NP_565452.1STRING:3702.AT2G19390.1
TAIR:AT2G19390UniGene:At.26637UniProt:O64572
Coordinates (TAIR10) chr2:-:8390136..8396477
Molecular Weight (calculated) 133369.00 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.82
Length 1211 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSAPGKFDYS SGGLDRPLYR SNFAAQMERS SSFRESMEHP VPSHPIMLRT TSPIAQTDVT NFFQCLRFDP KVVAADHKSI RQGDFKRHVS IALGILGDES
0101: PSGSLKGKFI PSPIPEEIKR FKAGLRENNV KARERVKIFN EASSVFNKFF PSVPTKKRSR PEGFSGDRSG DRLVSGPGLG KMGIQGQTLA GGFELDQQKL
0201: DERPKSGVPN KRTRTSMMDV RNNCIVRQSA AVDKDKEIMR VGNHNAVQGE DRTSTGIDGW ETSKMKKKRS SINADCHPNL ASNKVVDGYR DLKQGIQQKP
0301: TGDSRSRVNG DSNMFRQSAG NGATGYGRSD SLSHQTSLAG HSPLARVDSD HNSLYSEKRE RSIVSDKERV NLRGVNKSNI HDEFNSSSLV SNTKTNASVR
0401: GPRSGSGLPP KLSPGLHNTP SPIEWDISGC TNKPPTLSGV TQRKRMTSNR SSSPPVTQWA SQRPQKISRI ARRTNLVPIV SSQDEVPYSD NISDVGCSET
0501: GFGFHKRSPA ASPQLKLKGE SSFSTAALSE SEESGHPEIK SKDKGKQSDE VDGKAAQNIP RVSIPALQSR KSNKPAAGEE IGDGVRRQGR TGRGFSSTRS
0601: LNPNGVNKLK NVGTAKHLRS ARPIFDKNES KVGRPPTRKL SDRKAYKRQR ATATNAPTLD FHVGSNDGRE ELLAAVNSAI NIAQNFPNSF WKQMERYFGY
0701: ISDDHINFLK QQGELSSMGP TPVLTSSEFD SPVFPEELAT SRADSKASPL YQRLLSALIS EDSMGVNEDL QVDLDDDSEF SVLNNMEFNG FRNNERLELD
0801: ESENDGSAIL FKGVDKSAHH CNGKFPDNSP IDFVDIQYDK LGIDEKIYLE AQSLGISIDL MPSISNVEDE GIADEIKKLE EAICNEGSKK KEIVDRLLKP
0901: AIEMKELQEK ELDQLGYEKL IEMAYEKSKA SRRHHNAGGK NSNNKISKQA ALAFVRRTLE RCHQFEKTGK SCFSEPEIKD MFIAGLATAE DTLMDKEYNT
1001: STSTPMGSQP SSSLALIGQN SENYAKSSDV LPSENALLEQ TTGKEDTAWS NRVKKRELLL DDVGIGTQLS SNTKGKRSDR DRDGKGQASS RGGTNKIGRP
1101: SLSNAKGERK TKAKPKQKTT QISPSVRVPE QPKPSLPKPN EANSEYNNLE ALEETEPILD LSQLQIPDGL GDFDAQPGDI NSWFNMDDEE DFDMTELGIP
1201: TDDISELNIK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)