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AT4G28600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : no pollen germination related 2
Curator
Summary (TAIR10)
encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
Computational
Description (TAIR10)
no pollen germination related 2 (NPGR2); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2060 Blast hits to 1763 proteins in 357 species: Archae - 278; Bacteria - 547; Metazoa - 329; Fungi - 78; Plants - 247; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ09eggNOG:KOG4162EMBL:BT015369EMBL:BT020340
EMBL:CP002687EnsemblPlants:AT4G28600EnsemblPlants:AT4G28600.1entrez:828978
Gene3D:1.25.40.10GeneID:828978GO:GO:0005516GO:GO:0005886
Gramene:AT4G28600.1HOGENOM:HOG000238907InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734KEGG:ath:AT4G28600OMA:FSEREDPPfam:PF00515
Pfam:PF13181Pfam:PF14559Pfscan:PS50005Pfscan:PS50293
PhylomeDB:Q66GN3PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548
RefSeq:NP_194589.2SMART:SM00028SMR:Q66GN3STRING:3702.AT4G28600.1
SUPFAM:SSF48452TAIR:AT4G28600tair10-symbols:NPGR2UniGene:At.23998
UniProt:Q66GN3
Coordinates (TAIR10) chr4:+:14130046..14132599
Molecular Weight (calculated) 82737.70 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.30
Length 739 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNSEIRPEK LHLRKLRKSL RKIRMKCLCS GEQMRHREEE DKKSEVGVGR DYNGSSALST AESENAKKLD NGNIEEAELS LRETSSLNYE EARALLGRIE
101: YQKGNIEAAL RVFEGIDING ITVKMKTALT VREDRKHRRR SKGGFSTAPS PAMSKHAVSL LFEAIFLKAK SLQRLGRFQE AAESCRVILD IVETSLAEGA
201: SDNVTGDIKL QETLTKAVEL LPELWKLADS PRDAILSYRR ALLNHWKLDP ETTARIQKEY AVFLLYSGEE AVPPNLRSQT EGSFIPRNNV EEAILLLMLL
301: LRKVNLKRIS WDAAILDHLS FALTIAGDLT ALAKQFEELS PELLDQRELY HTLSLCYQGA GEGLVALGLL RKLFSEREDP NRTSGLLMAS KICGERSGLA
401: EEGLDYARKA IGNLGKECSQ LDGAARFVLG ITLTESSRMA VTETERIARQ SEGIQALESA DMTNPRVVHR LALENAEQRK LDSALAYAKE ALKLGAESDL
501: EVWLLLARVL SAQKRFSDAE TIVDAALNET GKWEQGKLLR LKAKLRLAKG EVKDAIKTYT QLLALLQVQS KSFNSAKKLP KGYVKELMSL ELGTWHDLAH
601: IYINLSQWRD AESCLSRSRL IAPYSSVRYH IEGVLYNRRG QLEEAMEAFT TALDIDPMHV PSLTSKAEIL LEVGNRSGIA VVRSFLMEAL RIDRLNHSAW
701: YNLGKMFKAE GSVSSMQEAV ECFQAAVTLE ETMPVEPFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)