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AT4G08180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 1C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2760 Blast hits to 2567 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 1466; Fungi - 697; Plants - 301; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP9EeggNOG:KOG1737EMBL:AK220993EMBL:AK221773
EMBL:AL080252EMBL:AL161510EMBL:AY139750EMBL:BX826423
EMBL:CP002687EnsemblPlants:AT4G08180EnsemblPlants:AT4G08180.1entrez:826368
ExpressionAtlas:Q8L751Gene3D:2.30.29.30GeneID:826368Genevisible:Q8L751
GO:GO:0006869GO:GO:0008289hmmpanther:PTHR10972hmmpanther:PTHR10972:SF67
HOGENOM:HOG000231234InParanoid:Q8L751InterPro:IPR000648InterPro:IPR001849
InterPro:IPR011993iPTMnet:Q8L751KEGG:ath:AT4G08180ncoils:Coil
OMA:VGSGKDQPANTHER:PTHR10972PaxDb:Q8L751Pfam:PF01237
Pfam:PF15413Pfam:Q8L751Pfscan:PS50003PhylomeDB:Q8L751
PIR:T10545PRIDE:Q8L751PRO:PR:Q8L751PROSITE:PS50003
ProteinModelPortal:Q8L751Proteomes:UP000006548RefSeq:NP_192558.2RefSeq:NP_974518.1
SMART:SM00233SMR:Q8L751STRING:3702.AT4G08180.1SUPFAM:0051579
SUPFAM:SSF50729TAIR:AT4G08180tair10-symbols:ORP1CUniGene:At.43648
UniProt:Q8L751
Coordinates (TAIR10) chr4:+:5169727..5173360
Molecular Weight (calculated) 92769.10 Da
IEP (calculated) 6.48
GRAVY (calculated) -0.68
Length 814 amino acids
Sequence (TAIR10)
(BLAST)
001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)