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AT2G36480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 1796 Blast hits to 853 proteins in 236 species: Archae - 0; Bacteria - 131; Metazoa - 390; Fungi - 345; Plants - 130; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y266eggNOG:KOG2071EMBL:CP002685EnsemblPlants:AT2G36480
EnsemblPlants:AT2G36480.1entrez:818222ExpressionAtlas:F4IMY0Gene3D:1.25.40.90
GeneID:818222GO:GO:0046872Gramene:AT2G36480.1hmmpanther:PTHR15921
InterPro:IPR006569InterPro:IPR006903InterPro:IPR007087InterPro:IPR008942
iPTMnet:F4IMY0PaxDb:F4IMY0Pfam:PF04818Pfscan:PS50157
Pfscan:PS51391PRIDE:F4IMY0PROSITE:PS00028PROSITE:PS50157
PROSITE:PS51391ProteinModelPortal:F4IMY0Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_565848.2scanprosite:PS00028SMART:SM00582STRING:3702.AT2G36480.3
SUPFAM:SSF48464TAIR:AT2G36480UniGene:At.14090UniGene:At.68108
UniProt:F4IMY0
Coordinates (TAIR10) chr2:-:15303114..15306274
Molecular Weight (calculated) 90877.30 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.61
Length 830 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVPSDQKLP TLYLLDSIVK NIGRDYIKYF GARLPEVFVK AYRQVDPPMH SNMRHLFGTW KGVFHPQTLQ LIEKELGFNA KSDGSAAVVS TARAEPQSQR
101: PPHSIHVNPK YLERQRLQQS GRTKGMVTDV PETAPNLTRD SDRLERVSSI ASGGSWVGPA KVNNIRRPQR DLLSEPLYEK DIESIAGEYD YASDLPHNSR
201: SVIKNVGSRI TDDGCEKQWY GATNRDPDLI SDQRDGLHSK SRTSNYATAR VENLESSGPS RNIGVPYDSW KNSEEEEFMW DMHSRLSETD VATINPKNEL
301: HAPDESERLE SENHLLKRPR FSALDPRFDP ANSTNSYSSE QKDPSSIGHW AFSSTNATST ATRKGIQPQP RVASSGILPS SGSGSDRQSP LHDSTSKQNV
401: TKQDVRRAHS LPQRDPRASR FPAKQNVPRD DSVRLPSSSS QFKNTNMREL PVEIFDSKSA AENAPGLTLA SEATGQPNMS DLLEAVMKSG ILSNNSTCGA
501: IKEESHDEVN PGALTLPAAS KPKTLPISLA TDNLLARLKV EQSSAPLVSC AASLTGITSV QTSKEKSKAS DPLSCLLSSL VSKGLISASK TELPSAPSIT
601: QEHSPDHSTN SSMSVSVVPA DAQPSVLVKG PSTAPKVKGL AAPSETSKSE PKDLIGLKFR ADKIRELHPS VISSLFDDLP HLCTSCSVRL KQKEELDRHM
701: ELHDKKKLEL SGTNSKCRVW FPKVDNWIAA KAGELEPEYE EVLSEPESAI EDCQAVAADE TQCACILCGE VFEDYFSQEM AQWMFKGASY LTNPPANSEA
801: SGPIVHTGCL TTSSLQSLEV GIAIKQEIVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)