AT2G36480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 1796 Blast hits to 853 proteins in 236 species: Archae - 0; Bacteria - 131; Metazoa - 390; Fungi - 345; Plants - 130; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15303114..15306274 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90877.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||
| Length | 830 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVPSDQKLP TLYLLDSIVK NIGRDYIKYF GARLPEVFVK AYRQVDPPMH SNMRHLFGTW KGVFHPQTLQ LIEKELGFNA KSDGSAAVVS TARAEPQSQR 101: PPHSIHVNPK YLERQRLQQS GRTKGMVTDV PETAPNLTRD SDRLERVSSI ASGGSWVGPA KVNNIRRPQR DLLSEPLYEK DIESIAGEYD YASDLPHNSR 201: SVIKNVGSRI TDDGCEKQWY GATNRDPDLI SDQRDGLHSK SRTSNYATAR VENLESSGPS RNIGVPYDSW KNSEEEEFMW DMHSRLSETD VATINPKNEL 301: HAPDESERLE SENHLLKRPR FSALDPRFDP ANSTNSYSSE QKDPSSIGHW AFSSTNATST ATRKGIQPQP RVASSGILPS SGSGSDRQSP LHDSTSKQNV 401: TKQDVRRAHS LPQRDPRASR FPAKQNVPRD DSVRLPSSSS QFKNTNMREL PVEIFDSKSA AENAPGLTLA SEATGQPNMS DLLEAVMKSG ILSNNSTCGA 501: IKEESHDEVN PGALTLPAAS KPKTLPISLA TDNLLARLKV EQSSAPLVSC AASLTGITSV QTSKEKSKAS DPLSCLLSSL VSKGLISASK TELPSAPSIT 601: QEHSPDHSTN SSMSVSVVPA DAQPSVLVKG PSTAPKVKGL AAPSETSKSE PKDLIGLKFR ADKIRELHPS VISSLFDDLP HLCTSCSVRL KQKEELDRHM 701: ELHDKKKLEL SGTNSKCRVW FPKVDNWIAA KAGELEPEYE EVLSEPESAI EDCQAVAADE TQCACILCGE VFEDYFSQEM AQWMFKGASY LTNPPANSEA 801: SGPIVHTGCL TTSSLQSLEV GIAIKQEIVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)