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AT5G11430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SPOC domain / Transcription elongation factor S-II protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G25520.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZCN4eggNOG:KOG1634EMBL:CP002688EnsemblPlants:AT5G11430
EnsemblPlants:AT5G11430.1entrez:831014Gene3D:1.10.472.30GeneID:831014
GO:GO:0003746GO:GO:0006351Gramene:AT5G11430.1hmmpanther:PTHR11477
hmmpanther:PTHR11477:SF17InParanoid:F4JXV3InterPro:IPR003618InterPro:IPR012921
KEGG:ath:AT5G11430OMA:ESPHGNSPaxDb:F4JXV3Pfam:PF07500
Pfam:PF07744Pfscan:PS51321PRIDE:F4JXV3PROSITE:PS51321
ProteinModelPortal:F4JXV3Proteomes:UP000006548RefSeq:NP_196704.2SMART:SM00510
SMR:F4JXV3STRING:3702.AT5G11430.1SUPFAM:0037100SUPFAM:SSF46942
TAIR:AT5G11430UniGene:At.5125UniGene:At.69010UniGene:At.73156
UniProt:F4JXV3
Coordinates (TAIR10) chr5:+:3648469..3652256
Molecular Weight (calculated) 96434.50 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.68
Length 873 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMAEINGSM QLVGKHKSLP QTTLGGGSAS EAPNKQVRPW LQQLSPASNG ILHIPTKILS QETLHSLMHG KKATQTESAP QKPAKPVVNK KQHVPPPQRS
101: VKAMEEVNES VRSKMRESLA SALALVKKDD DSPKGKENIG TVETPVITQE NTQSFQPASP ASISVPVGEG TMSEMPTSVE SSVQKDSEIP VDIMMEDVIK
201: FNVLKSQYDE VFPRDNVPFT DIIFPNDDLL HGNELSWDLE VSDLGETKDY GTGGEKSFQD PKLLASKIEM ELYKLFGGVN KKYRERGRSL LFNLKDKNNP
301: ELRERVMSEE ISAERLCSMT AEELASKELS QWRQAKAEEM AKMVVLQDTD IDVRSLVRKT HKGEFQVEIE PVDRGTVDVS GGIMSRSKRR PRAKSHSVKT
401: ALKDEAAKAD NEKSRSTPPS TEEIDPMQGL GIDDELKDVE FLPPIVSLDE FMESLDSEPP FESPHGNSEM QVSPSEKSDS EAGSDSKSPK GSPKELSDKS
501: LPEAKPEKID EVTPEFDANV KVDDDISRVE KAAALSDDKG ERAWDGILQL SMSSVVPVAG IFKSGEKAET SEWPAMVEVK GRVRLSGFGK FIQELPKSRT
601: RALMVMYLAY KDGISESQRG SLIEVIDSYV ADQRVGYAEP ASGVELYLCP TRGETLDLLN KVISQEQLDE VKSLDIGLVG VVVWRRAVVP KPGSGSKRQH
701: SFSSSIGSKT SVLPVNKKQR VHVTEKPLVV ASMRNHHHGY VKHDTAADDD VPPGFGPVAS RDEDDLPEFN FNSSVVPVSS PQPLPAQSKS LDQVRKLIHK
801: YGKSASTYDD DDDEDDIPEW QPHVPSHQLP PPPPPPLGFR PEVFRPPQDG WYDNQNGGSG QHYERNQSRN RGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)