AT2G43410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding | ||||||||||||
| Curator Summary (TAIR10) |
FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing. | ||||||||||||
| Computational Description (TAIR10) |
FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 18609 Blast hits to 15572 proteins in 650 species: Archae - 12; Bacteria - 876; Metazoa - 10127; Fungi - 2512; Plants - 3298; Viruses - 9; Other Eukaryotes - 1775 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18026397..18030989 | ||||||||||||
| Molecular Weight (calculated) | 94907.00 Da | ||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||
| Length | 858 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSMKPFRA DDSGFQSNNL WVGSLTPETT ESDLTELFGR YGDIDRITVY SSRGFAFIYY RHVEEAVAAK EALQGANLNG SQIKIEYARP AKPCKSLWVG 101: GIGPNVSKDD LEEEFSKFGK IEDFRFLRER KTAFIDYYEM DDALQAKSMN GKPMGGSFLR VDFLRSQAPK KEQWAGSYDN RNGNMNHKPQ YPHSYEDFKG 201: DVQPSKVLWI GFPPTATQCN DEQILHNAMI LFGEIERVKS YPSRNFALVE FRSAEEARQC KEGLQGRLFN NPRIKIMYSN DELPPEQDDT SFYSEYNDVV 301: GKEPNWRRPS ANGTGILPSP TGPGILPSPA QGTRRPMRSN PDSWEGYDPA QLVRESKRTR RDGSVDGFTP MGVDERSFGR GSVAARPIRG PPDSDHIWRG 401: MIAKGGTPVC CARCVPMGKG IETKLPEVVN CSARTDLNML AKHYAVAIGC EIVFFVPDRE EDFASYTEFL RYLSSKDRAG VAKLDDGTTL FLVPPSDFLT 501: DVLQVTRQER LYGVVLKLPP PAVPVTASYR QESQSNPLHY MDQARDSPAN ASHSLYPPRE NYIRGAPEHL TAASKPSVSE PLRIPNNAAP QAGVSLTPEL 601: LATLASILPA TSQPAAPESH QPMSGPSTVV STAHQSNGLY NGEAPSQAWK RGPQTVHDAS NQSFQQYGNQ YTPAGQLPPP PSRYPPASNN PNYTSGMVHG 701: NMQYQSQSVN MPQLSPLPNM PHNNYSMYTQ GSSNHPVSQP MVQQYQPEAS MPNQNYGPIP SYQQANFHGV TTNQAQNLNP SQFQAAMQPP ADKANLEPQN 801: QALRLQPMIS GDGQGTTDGE VDKNQRYQST LQFAANLLLQ IQQKQQQQSS GTPAGQGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)