AT5G07940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1); Has 1906 Blast hits to 1127 proteins in 203 species: Archae - 2; Bacteria - 210; Metazoa - 401; Fungi - 205; Plants - 136; Viruses - 0; Other Eukaryotes - 952 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2534720..2540086 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 167427.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||
| Length | 1526 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPGNEFGEKI HNFFGQEGLS QDQQHQSQVV DRSWSSFNNG LVGNQRQIDP SLIANLKSYN TQQSVDHERG HQSSNSQHGL NYTQQPIRSE FSRSLLQEHQ 0101: QLPNGYMHGN LGLQTMPNGA NVLGGDVESS RDKLSARGFT PELHNVPMRL EMGESPVNYD FFGGQQQSNT QLSGMLQPLP RQQMTFNDMQ LLKQQVMVKQ 0201: MHEYQMQQQL QKQQLEARQL NSLNRNAVNG SCASDTQSRM INGIPLQNAS SNWFQPDLMT GNTNWMHRGI SPAVQGSSSG LMITPEHGQS NLMAQQFGPS 0301: LYGMPVSGTN APQNAFSSVQ MNRLAAPHGS ANRSYSLTNQ PTSFLNQGDV QDSQMHPRST YQEKALFSQT SVPDSNNRPN FENFQQDDSR ERNISAQDKF 0401: CQMEDSGPAE KSFMKVPENM NALQKSSALD PTEEKILFGS DDNLWDAFGS STDMSLQGNL MSSNSDLFDA CPSLQSGSWS ALMQSAVAET TSDDAGVHGW 0501: VNSNTVPHAN LHTDSRAQDL GAKASNPLSE RFHSDSTGAA VQHLPDKVNK VSDHGLFEKP MAQLSQMAGN IIHSSSIDEQ NNLCSIRQNE GIEDRFGIWK 0601: AASNPNVAAL IEQKNHFTQN PQRASYGFGI ASAGNDSSAS RDVQGNIQQH LDNNSVEKAI PQLKSRDGSQ ILESYARNNA GTNEMVNARD FSMLPGGKET 0701: QSGHVGSRPS TSRKFQYHPM GNIDVTNESC QEKVSHLPTT LEQVPVGNQG YFGQSKFLGQ SAMNMPIDRG HVSQNDLNCT NEAFNGMGSE NSPSTSASAD 0801: RNVDRCNQVK SASSRQTMLE LLHKVDQSPD NSSETNVSGI PEANASAEYG GQFRHNQSSA SQGFNLQLAP PSQLAPSPDN VQFSRNSLQP LNSFHTGPEK 0901: GGTSQSRFAP WASNQSYQQS THQGPFPGIL GGSNMTSGFP YSRGYHQNQQ MAVATRQSAA NNSVDSSSEL STPQVKERDE SSDFDQRMLS ASQPLVASSS 1001: PQQSSSSGMM SDSPSGISAP QHQFWNQPSK PQPVILRPHP LPSNNMAASF SRQEKTNQLS SQNGDMSLSG RDMVNMHGLQ SKDMGAKRTS NVASMFSKMV 1101: QSNHQSFDRS LPSNNVPKDS LHHEEQMVGS GEGDTSKVTV ENGDFDPQEV AHKGEQQSPS RSDGLVRGGL NNKESANHLP HLGHTVSQSF SSKNHAASVR 1201: ADHQQISPQM APSWYSQYGT FKNGLVQPMN DTGRFTPLKI GEQSSNVESS VDGTHTVQSC KQCLMEQMSG SAPGVETPSS DSLLHGATDK LLKVDKPKKR 1301: KTATSELQSW NKEVMQDSQR LKTLSEAEIN WARETNRFAE KVEFETLLED SPPIRSKRRL IHTTQLMQQL FSPPPARVIS LVASSNYDVV AYTAGRAALG 1401: DACSSSSTDR SEGFSPPNNS NPLSERTENE KISDQYISKA AEDFISRTRK LETDFAGLEN GTTIPDLRVE VQDLEKFAVI NRFAKFHPPS SSMNRTVNSL 1501: KLNLQRYVTI APMPQNIPDR VQCLSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)