suba logo
AT2G01690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 6269 Blast hits to 4446 proteins in 336 species: Archae - 2; Bacteria - 171; Metazoa - 2181; Fungi - 947; Plants - 235; Viruses - 11; Other Eukaryotes - 2722 (source: NCBI BLink).
Protein Annotations
BioGrid:101eggNOG:ENOG410XP6EeggNOG:KOG0212EMBL:AC006069
EMBL:AK226840EMBL:AY080803EMBL:CP002685EnsemblPlants:AT2G01690
EnsemblPlants:AT2G01690.1entrez:814698ExpressionAtlas:Q9ZU97Gene3D:1.25.10.10
GeneID:814698Genevisible:Q9ZU97GO:GO:0043550GO:GO:0070772
hmmpanther:PTHR16023hmmpanther:PTHR16023:SF0HOGENOM:HOG000216640InParanoid:Q9ZU97
InterPro:IPR011989InterPro:IPR016024InterPro:IPR021133InterPro:IPR021841
InterPro:IPR026825InterPro:IPR032878KEGG:ath:AT2G01690KO:K15305
ncoils:CoilPANTHER:PTHR16023PaxDb:Q9ZU97Pfam:PF11916
Pfam:PF12755Pfam:Q9ZU97Pfscan:PS50077PhylomeDB:Q9ZU97
PIR:H84427PRIDE:Q9ZU97PRO:PR:Q9ZU97PROSITE:PS50077
ProteinModelPortal:Q9ZU97Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-1660516
Reactome:R-ATH-1660517RefSeq:NP_565275.1SMR:Q9ZU97STRING:3702.AT2G01690.2
SUPFAM:SSF48371TAIR:AT2G01690UniGene:At.13462UniProt:Q9ZU97
Coordinates (TAIR10) chr2:-:309144..313499
Molecular Weight (calculated) 83916.40 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.20
Length 743 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDALSAIPA AVHRNLSDKL YEKRKNAALE LENIVKNLTS SGDHDKISKV IEMLIKEFAK SPQANHRKGG LIGLAAVTVG LSTEAAQYLE QIVPPVINSF
101: SDQDSRVRYY ACEALYNIAK VVRGDFIIFF NKIFDALCKL SADSDANVQS AAHLLDRLVK DIVTESDQFS IEEFIPLLKE RMNVLNPYVR QFLVGWITVL
201: DSVPDIDMLG FLPDFLDGLF NMLSDSSHEI RQQADSALSE FLQEIKNSPS VDYGRMAEIL VQRAASPDEF TRLTAITWIN EFVKLGGDQL VRYYADILGA
301: ILPCISDKEE KIRVVARETN EELRSIHVEP SDGFDVGAIL SVARRQLSSE FEATRIEALN WISTLLNKHR TEVLCFLNDI FDTLLKALSD SSDDVVLLVL
401: EVHAGVAKDP QHFRQLIVFL VHNFRADNSL LERRGALIVR RMCVLLDAER VYRELSTILE GEDNLDFAST MVQALNLILL TSPELSKLRE LLKGSLVNRE
501: GKELFVALYT SWCHSPMAII SLCLLAQAYQ HASVVIQSLV EEDINVKFLV QLDKLIRLLE TPIFTYLRLQ LLEPGRYTWL LKTLYGLLML LPQQSAAFKI
601: LRTRLKTVPT YSFSTGNQIG RATSGVPFSQ YKHQNEDGDL EDDNINSSHQ GINFAVRLQQ FENVQNLHRG QARTRVNYSY HSSSSSTSKE VRRSEEQQQQ
701: QQQQQQQQQQ QQRPPPSSTS SSVADNNRPP SRTSRKGPGQ LQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)