suba logo
AT5G20490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Myosin family protein with Dil domain
Curator
Summary (TAIR10)
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational
Description (TAIR10)
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).
Protein Annotations
BioGrid:17447eggNOG:COG5022eggNOG:KOG0160EMBL:AF296833
EMBL:AK228703EMBL:CP002688EMBL:HQ427882EMBL:JN229265
EnsemblPlants:AT5G20490EnsemblPlants:AT5G20490.1entrez:832171ExpressionAtlas:F4K5J1
Gene3D:3.40.50.300GeneID:832171Genevisible:F4K5J1GO:GO:0003774
GO:GO:0005524GO:GO:0009506GO:GO:0010090GO:GO:0010091
GO:GO:0016459GO:GO:0030048GO:GO:0030133GO:GO:0035619
GO:GO:0048467GO:GO:0048767GO:GO:0048768GO:GO:0051645
GO:GO:0051646GO:GO:0060151GO:GO:0090436Gramene:AT5G20490.1
hmmpanther:PTHR13140hmmpanther:PTHR13140:SF390HOGENOM:HOG000029608InParanoid:F4K5J1
InterPro:IPR000048InterPro:IPR001609InterPro:IPR002710InterPro:IPR004009
InterPro:IPR027417iPTMnet:F4K5J1ncoils:CoilPaxDb:F4K5J1
Pfam:F4K5J1Pfam:PF00063Pfam:PF00612Pfam:PF01843
Pfam:PF02736Pfscan:PS50096Pfscan:PS51126Pfscan:PS51456
PRIDE:F4K5J1PRINTS:PR00193PRO:PR:F4K5J1PROSITE:PS50096
PROSITE:PS51126PROSITE:PS51456Proteomes:UP000006548RefSeq:NP_197549.3
SMART:SM00015SMART:SM00242SMART:SM01132STRING:3702.AT5G20490.1
SUPFAM:SSF52540TAIR:AT5G20490tair10-symbols:ATXIKtair10-symbols:XI-17
tair10-symbols:XIKTMHMM:TMhelixUniGene:At.43864UniProt:F4K5J1
UniProt:F4K5J2
Coordinates (TAIR10) chr5:-:6927064..6936825
Molecular Weight (calculated) 175062.00 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.38
Length 1545 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKETEGNAQC YAIFVVFLIN IIVGSHVWIE DPGAAWIDGE VVKINGEEVH AHTTNGKTVV ANIANVFPKD TEAPPGGVDD MTKLSYLHEP GVLNNLAMRY
0101: ELNEIYTYTG NILIAVNPFQ RLPHLYDTHM MEQYKGAGFG ELSPHVFAIA EVAYRAMINE GKSNSILVSG ESGAGKTETT KMLMRYLAYL GGRSGVEGRT
0201: VEQQVLESNP VLEAFGNAKT LRNNNSSRFG KFVELQFDNC GRISGAAVRT YLLERSRVCQ ISDPERNYHC FYLLCAAPPE EREKFKLGDP KLFHYLNQSK
0301: CYKLDGVDDT EEYLATRRAM DIVGISEEEQ DAIFRVVAAI LHLGNVNFAK GKEIDSSVLK DEKSRYHLDV CAELLRCDAK KMEDALIKRV MVTPEEVITR
0401: TLDPDSATGS RDALAKTIYS RLFDWLVDKI NNSIGQDPNS KTIIGVLDIY GFESFKINSF EQFCINFTNE KLQQHFNQHV FKMEQEDYTK EEINWSYIEF
0501: VDNKDVLELI EKKPGGVIAL LDEACMFPKS THETFAQKLY QTFKNYKRFT KPKLSRTSFA ISHYAGEVTY QADLFLDKNK DYVVAEHQDL LIASSDTFVA
0601: GLFPRLPEET SSKTKFSSIG SRFKLQLQSL METLSSTEPH YIRCVKPNNV LKPAIFENVN VIQQLRCGGV LEAIRISCAG YPTKRTFYEF LNRFGVLAPE
0701: VLEGNYDDKV ACKMLLDKIG LKGYELGKTK VFLRAGQMAE LDARRAEVLG NAARRIQRQS RTFIACKEFR ALRGAAIVLQ SNCRGKLACN LYEEMRRQAA
0801: AVKIQKIFRR HIARESYLRI RHSTITVQTA LRGMVARNEF RFRKQMKAAT IIQARLRSHL THSYYKQLQK AALSTQCGWR SRVARKELRT LKMAARDTGA
0901: LREAKDKLEK RVEELTWRLQ LEKRQRTELE EAKTQEYAKQ QEALETMRLQ VEEANAAVIR EREAARKAIE EAPPVIKETP VLVEDTEKIN SLTSEVEALK
1001: ASLQAERQAA ENLRKAFSEA EARNSELATE LENATRKADQ LHESVQRLEE KLSNSESEIQ VLRQQALAIS PTSRTMATRS KTMLLPRTPE NGNYLNGGTK
1101: TTPDMTLAVR EPESEEKPQK HLNEKQQENQ DLLVKCISQN LGYNGDKPVA ACVIYKCLLH WRSFEVERTS VFDRIIQTIA TAIEVPDNNE VLAYWLSNSA
1201: TLLLLLQRTL KATGAASLTP QRRRTTSASL FGRMSQGLRG SPQSAGLSFL NRQGLTKLDD LRQVEAKYPA LLFKQQLTAF LEKIYGMIRD NLKKEISPLL
1301: GLCIQAPRTS RASLVKGRAQ ANAVAQQALI AHWQSIRKSL NSYLNLMKAN NAPPFLVRKV FTQIFSFINV QLFNSLLLRR ECCSFSNGEY VKAGLAELEQ
1401: WCIEATDEYA GSAWDELRHI RQAVGFLVIH QKPKKTLDEI TRELCPVLSI QQLYRISTMY WDDKYGTHSV SSDVIANMRV MMTEDSNNAV SSSFLLDDDS
1501: SIPFTVEDIS KSMQQVDVND IEPPQLIREN SGFGFLLTRK EGSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)