AT5G43900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 peroxisome 0.500 ASURE: cytosol,peroxisome What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myosin 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myosin 2 (MYA2); CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI B (TAIR:AT1G04160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17657241..17666653 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 169940.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1505 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVANFNPSVG SFVWVEDPDE AWIDGEVVQV NGDEIKVLCT SGKHVVTKIS NAYPKDVEAP ASGVDDMTRL AYLHEPGVLQ NLHSRYDINE IYTYTGSILI 0101: AVNPFRRLPH LYSSHMMAQY KGASLGELSP HPFAVADAAY RQMINDGVSQ SILVSGESGA GKTESTKLLM RYLAYMGGRA AAEGRSVEQK VLESNPVLEA 0201: FGNAKTVRNN NSSRFGKFVE IQFDEKGRIS GAAIRTYLLE RSRVCQVSDP ERNYHCFYML CAAPQEDVKK FKLEEPKKYH YLNQSKCLEL DSINDAEEYH 0301: ATRRAMDVVG ISTEEQDAIF SVVAAILHIG NIEFAKGEEI DSSIPKDDKS LFHLKTAAEL LSCDEKALED SLCKRIMVTR DETITKTLDP EAATLSRDAL 0401: AKVMYSRLFD WLVDKINSSI GQDHDSKYLI GVLDIYGFES FKTNSFEQFC INLTNEKLQQ HFNQHVFKME QEEYKKEEIN WSYIEFVDNQ DILDLIEKKP 0501: GGIIALLDEA CMFPRSTHET FAQKLYQTFK THKRFTKPKL ARSDFTICHY AGDVTYQTEL FLDKNKDYVI AEHQALLNSS SCSFVASLFP PMSDDSKQSK 0601: FSSIGTRFKQ QLVSLLEILN TTEPHYIRCI KPNNLLKPGI FENENILQQL RCGGVMEAIR ISCAGYPTRK HFDEFLARFG ILAPEVLVKN SDDPAACKKL 0701: LDKVGLEGYQ IGKTKVFLRA GQMADLDTRR TEVLGRSASI IQRKVRSYLA KKSFIVLRNS AKQIQSVCRG YLARSVYEGM RREAAALKIQ RDLRRFLARK 0801: AYTELYSAAV SVQAGMRGMV ARKELCFRRQ TKAAIIIQTW CRGYLARLHY RKLKKAAITT QCAWRSKVAR GELRKLKMAA RETGALQAAK NKLEKQVEEL 0901: TWRLQLEKRI RTDLEEAKKQ ESAKAQSSLE ELQLKCKETE ALLIKEREAA KKIAETAPII KEIPVVDQEL MDKITNENEK LKSMVSSLEM KIGETEKKLQ 1001: ETTKISQDRL NQALEAESKL VKLKTAMQRL EEKILDMEAE KKIMHQQTIS TPVRTNLGHP PTAPVKNLEN GHQTNLEKEF NEAEFTTPVD GKAGKSAAER 1101: QIMNVDALID CVKDNIGFSN GKPVAAFTIY KCLLHWKCFE SEKTNVFDRL IQMIGSAIEN EDDNSHLAYW LTSTSALLFL LQKSLKTNGS GATQSKKPPA 1201: STSLFGRMAM SFRSSPASGN LAAAAEAAAL AVVRPVEAKY PALLFKQQLA AYVEKMFGMV RDNLKRELST LLSLCIQAPR SSKGGMLRSG RSFGKDSPAV 1301: HWQSIIDGLN SLLVTLKENH VPLVLIQKIY SQTFSYINVQ LFNSLLLRKE CCTFSNGEFV KSGLAELELW CCQAKEYSGP SWEELKHIRQ AVGFLVIHQK 1401: YRISYDEIAN DLCPVLSVQQ LYRICTLYWD DSYNTRSVSQ EVISSMRTLM TEESNDADSD SFLLDDDSSI PFSIDDISSS MEEKDFVGIK PAEELLENPA 1501: FVFLH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)