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AT5G03530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog C2A
Curator
Summary (TAIR10)
Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.
Computational
Description (TAIR10)
RAB GTPase homolog C2A (RABC2A); FUNCTIONS IN: GTP binding, myosin XI tail binding, GTP-dependent protein binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2B (TAIR:AT3G09910.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17086eggNOG:ENOG410XPD0eggNOG:KOG0080EMBL:AK119027
EMBL:AL162751EMBL:BT006101EMBL:CP002688EMBL:D89824
EnsemblPlants:AT5G03530EnsemblPlants:AT5G03530.1entrez:831810Gene3D:3.40.50.300
GeneID:831810Genevisible:O49841GO:GO:0005525GO:GO:0005777
GO:GO:0005886GO:GO:0007264GO:GO:0015031GO:GO:0030742
GO:GO:0080115Gramene:AT5G03530.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF536
HOGENOM:HOG000233968InParanoid:O49841IntAct:O49841InterPro:IPR001806
InterPro:IPR005225InterPro:IPR025662InterPro:IPR027417KEGG:ath:AT5G03530
KO:K07910OMA:GLFLECSPaxDb:O49841Pfam:O49841
Pfam:PF00071Pfscan:PS51419PhylomeDB:O49841PIR:T48379
PRIDE:O49841PRO:PR:O49841PROSITE:PS00675PROSITE:PS51419
ProteinModelPortal:O49841Proteomes:UP000006548RefSeq:NP_568121.1scanprosite:PS00675
SMR:O49841STRING:3702.AT5G03530.1SUPFAM:SSF52540TAIR:AT5G03530
tair10-symbols:ATRABtair10-symbols:ATRAB ALPHAtair10-symbols:ATRAB18Btair10-symbols:ATRABC2A
tair10-symbols:RABC2ATIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.346
UniProt:O49841
Coordinates (TAIR10) chr5:-:885741..887061
Molecular Weight (calculated) 23306.90 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.25
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)