AT5G45290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: TOXICOS EN LEVADURA 2 (TAIR:AT3G16720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18350011..18352092 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60778.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.81 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSGRSKSCL GSSAMAREAS DVAQPPPSSS SGGGRRRRSK SLFCGLHSSC LASSSTSHYS DDDNDEQVCN GWMRKSHGSV TRRRMESRRD ASDCYDKELK 101: DDKKSENERH CDELELDDEC GVEEEEEEAS VSNVQMRNVS GSIQESSTPG RVFSHFKFIP GNISSRLSRA SSSRSFNTTY PVSSSHREDG VTSPSESAIR 201: LNDRVESPRI PVIDNVVRDI DAMRFGEDGS LRSPRVVNGM DSTYAGLLDR RHVVREPSIE RNVRFSRTLS VGRLRDRVLR RSSLSDFAFR PSPHQGEEDT 301: DLFSAETAAA EDAPVTSTSI LNRSASSIRR TLFGIQDHET PAALVREGRY QGLLEHRSDF LERRRRIRSQ VRALQRLGSR FENVAVHHDR SCVLSGQDQA 401: GRCTCRAVTN RGSTTATTDE TNARASISRI VLLAEALFEV LDEIHQQSVV LSSQQPSVSS IGSVPAPNDV VDLLPIKLYT KSQSEDPSQC YICLVEYEEA 501: DSIRTLPCHH EFHKTCVDKW LKEIHRVCPL CRGDICRHDP SSEQH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)