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AT1G50710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.943
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 109 Blast hits to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFF7eggNOG:ENOG4111KUBEMBL:AC079027EMBL:AC079279
EMBL:AK117516EMBL:BT005509EMBL:CP002684EnsemblPlants:AT1G50710
EnsemblPlants:AT1G50710.1entrez:841493GeneID:841493Genevisible:Q8GYM3
GO:GO:0005876GO:GO:0007067GO:GO:0009524GO:GO:0051011
GO:GO:0051225GO:GO:0051301GO:GO:0070652Gramene:AT1G50710.1
hmmpanther:PTHR16219hmmpanther:PTHR16219:SF1HOGENOM:HOG000238737InterPro:IPR029327
KEGG:ath:AT1G50710KO:K16587ncoils:CoilOMA:PAYLWQT
PaxDb:Q8GYM3Pfam:PF14735PhylomeDB:Q8GYM3PIR:H96543
ProteinModelPortal:Q8GYM3Proteomes:UP000006548RefSeq:NP_175486.2STRING:3702.AT1G50710.1
TAIR:AT1G50710UniGene:At.37974UniGene:At.50654UniProt:Q8GYM3
Coordinates (TAIR10) chr1:-:18784719..18787615
Molecular Weight (calculated) 47772.70 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.36
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKALQGAAQ NLPADVNQLI DQLERHCLAP DGSLVTKSVY SDLQLAREEM SRERLRYLEA MAIYCEAVAM VEEYQQAISV ANHGGIRDVQ GLYPQLGLKN
101: SPQVYETLEH RLVVAEAAQK LRLPLISDGG EIHEEEIEKW SILSRSSLDS ASTSFTISST SNSVNYANSS ANSVAGGISL SAVDTDVVGG VPNRFLGITP
201: AYLSYVQLQN TISMDMADYQ MFLAREIEGR LKEKCDKLAD AIVDDTDSST GNRNSSARLP ERVKFIIEEI ERDEAALRED LYSADRKFAE YYNVLEQILG
301: VLIKLVKDLK LEHQHKYNEM QKTWLCKRCE TMNAKLRVLE NVLLLETYTP DSISALHNIR NYLVEATEEA SAAYNKAVTR LREYQGVDPH FDTIARQYHD
401: IVKKLENMQW TIHQVEMDLK SHD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)