AT3G05710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : syntaxin of plants 43 | ||||||||||||
| Curator Summary (TAIR10) |
member of SYP4 Gene Family | ||||||||||||
| Computational Description (TAIR10) |
syntaxin of plants 43 (SYP43); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 41 (TAIR:AT5G26980.2); Has 2057 Blast hits to 2057 proteins in 255 species: Archae - 6; Bacteria - 12; Metazoa - 861; Fungi - 474; Plants - 365; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1685262..1687229 | ||||||||||||
| Molecular Weight (calculated) | 36896.40 Da | ||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||
| Length | 330 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSRGTITV GLPPDWVDVS EEISVYIQRA 101: RTKMAELGKA HAKALMPSFG DGKEDQHQIE TLTQEVTFLL KKSEKQLQRL SAAGPSEDSN VRKNVQRSLA TDLQNLSMEL RKKQSTYLKR LRLQKEDGAD 201: LEMNLNGSRY KAEDDDFDDM VFSEHQMSKI KKSEEISIER EKEIQQVVES VSELAQIMKD LSALVIDQGT IVDRIDYNIQ NVASTVDDGL KQLQKAERTQ 301: RQGGMVMCAS VLVILCFIML VLLILKEILL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)