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AT1G48760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.917
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : delta-adaptin
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 3854 Blast hits to 3636 proteins in 331 species: Archae - 0; Bacteria - 22; Metazoa - 1599; Fungi - 800; Plants - 408; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).
Protein Annotations
BioGrid:26523eggNOG:ENOG410XQFBeggNOG:KOG1059EMBL:AC073555
EMBL:AY056123EMBL:CP002684EnsemblPlants:AT1G48760EnsemblPlants:AT1G48760.1
EnsemblPlants:AT1G48760.2EnsemblPlants:AT1G48760.3entrez:841298Gene3D:1.25.10.10
GeneID:841298Genevisible:Q9C744GO:GO:0000139GO:GO:0006886
GO:GO:0007032GO:GO:0008565GO:GO:0016192GO:GO:0030117
GO:GO:0080171GO:GO:1990019Gramene:AT1G48760.1Gramene:AT1G48760.2
Gramene:AT1G48760.3hmmpanther:PTHR22781HOGENOM:HOG000110366InParanoid:Q9C744
IntAct:Q9C744InterPro:IPR002553InterPro:IPR011989InterPro:IPR016024
InterPro:IPR017105iPTMnet:Q9C744KEGG:ath:AT1G48760KO:K12396
OMA:STLHECRPaxDb:Q9C744Pfam:PF01602Pfam:Q9C744
PhylomeDB:Q9C744PIRSF:PIRSF037092PRIDE:Q9C744PRO:PR:Q9C744
ProteinModelPortal:Q9C744Proteomes:UP000006548RefSeq:NP_001031156.1RefSeq:NP_175308.1
RefSeq:NP_849785.1SMR:Q9C744STRING:3702.AT1G48760.1SUPFAM:SSF48371
TAIR:AT1G48760tair10-symbols:delta-ADRUniGene:At.56703UniGene:At.75142
UniProt:Q9C744
Coordinates (TAIR10) chr1:-:18036652..18039261
Molecular Weight (calculated) 97159.00 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.27
Length 869 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSTSIMD NLFQRSLEDL IKGFRLQLLG ESNFISRAVE EIRREIKATD LSTKSTALHK LSYLAALHGV DMSWAAFHAV EVVSSSRFQH KRIGYQAITQ
101: SFNDQTSVML LITNQVRKDL NSANEYEVSL ALECLSRIGT HDLARDLTPE VFTLLGSSKS FVKKKAIGVV LRVFEKYHDA VKVCFKRLVE NLETSDPQIL
201: SAVVGVFCEL ATKDPQSCLP LAPEFYKVLV DSRNNWVLIK VLKIFAKLAL IEPRLGKKVA EPICEHMRRT VAKSLVFECV RTVVSSLSDN EAAVKLAVAK
301: IREFLVEDDP NLKYLGLNAL SIVAPKHLWA VLENKEVVVK AMSDEDPNVK LEALHLLMAM VNEDNVSEIS RILMNYALKS DPLFCNEIIF SVLSACSRNA
401: YEIIVDFDWY LSLLGEMARI PHCQRGEDIE HQLIDIGMRV RDARPQLVRV SWALLIDPAL LGNLFLHPIL SAAAWVSGEY VEFSKNPYET VEALLQPRTD
501: LLPPSIKAIY IHSAFKVLVF CLGSYFSSQE PTSSSLAQES SSGSLLVNVF THESILSLVN VIELGLGPLS GYHDVEVQER AKNVLGYISV IKQEIAEQLN
601: LQDNETEASR VTAFMEDVFS EEFGPISATA QEKVCVPDGL ELKENLGDLE EICGEHLKPV ESDSVSYTDK ISFSVSKLRI RDQQEATSSS SPPHEASSLL
701: AEHRKRHGMY YLTSQKEDQD SNGTSSDYPL ANELANEISQ DSFNPKRKPN QSKPRPVVVK LDDGDESRIT PQAKTNIQTA NDDESLSRAI QSALLVKNKG
801: KEKDRYEGNP NSGQQEKEES SRIENHQNSE KKKKKKKKKK GEGSSKHKSR RQNEVASASE QVIIPDFLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)