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AT3G15730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phospholipase D alpha 1
Curator
Summary (TAIR10)		 Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.
Computational
Description (TAIR10)		 phospholipase D alpha 1 (PLDALPHA1); FUNCTIONS IN: phospholipase D activity, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: response to cadmium ion, fatty acid metabolic process, seed germination, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D, plant (InterPro:IPR011402); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 2 (TAIR:AT1G52570.1); Has 2073 Blast hits to 1588 proteins in 412 species: Archae - 0; Bacteria - 593; Metazoa - 344; Fungi - 417; Plants - 575; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15730-MONOMERBioCyc:MetaCyc:AT3G15730-MONOMERBioGrid:6150BRENDA:3.1.4.4
DNASU:820816EC:3.1.4.4eggNOG:COG1502eggNOG:KOG1329
EMBL:AB017071EMBL:AF428278EMBL:AK226887EMBL:CP002686
EMBL:U36381EnsemblPlants:AT3G15730EnsemblPlants:AT3G15730.1entrez:820816
ExpressionAtlas:Q38882Gene3D:2.60.40.150GeneID:820816Genevisible:Q38882
GO:GO:0004630GO:GO:0005509GO:GO:0005546GO:GO:0005634
GO:GO:0005739GO:GO:0005773GO:GO:0005783GO:GO:0005829
GO:GO:0005886GO:GO:0006631GO:GO:0009506GO:GO:0009507
GO:GO:0009737GO:GO:0009738GO:GO:0009789GO:GO:0009845
GO:GO:0009873GO:GO:0010119GO:GO:0016020GO:GO:0016042
GO:GO:0030136GO:GO:0031966GO:GO:0046470GO:GO:0046686
GO:GO:0070290Gramene:AT3G15730.1hmmpanther:PTHR18896hmmpanther:PTHR18896:SF11
HOGENOM:HOG000240112InParanoid:Q38882IntAct:Q38882InterPro:IPR000008
InterPro:IPR001736InterPro:IPR011402InterPro:IPR015679InterPro:IPR024632
iPTMnet:Q38882KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4KEGG:ath:AT3G15730
KO:K01115OMA:RISDKYWPANTHER:PTHR18896PaxDb:Q38882
Pfam:PF00168Pfam:PF00614Pfam:PF12357Pfam:Q38882
Pfscan:PS50035PhylomeDB:Q38882PIRSF:PIRSF036470PRIDE:Q38882
PRO:PR:Q38882PROSITE:PS50035ProteinModelPortal:Q38882Proteomes:UP000006548
RefSeq:NP_188194.1SMART:SM00155SMART:SM00239SMR:Q38882
STRING:3702.AT3G15730.1SUPFAM:SSF49562SUPFAM:SSF56024TAIR:AT3G15730
tair10-symbols:PLDtair10-symbols:PLDALPHA1UniGene:At.23882UniProt:Q0WV84
UniProt:Q38882
Coordinates (TAIR10) chr3:+:5330835..5333474
Molecular Weight (calculated) 91853.10 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.40
Length 810 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAQHLLHGTL HATIYEVDAL HGGGVRQGFL GKILANVEET IGVGKGETQL YATIDLQKAR VGRTRKIKNE PKNPKWYESF HIYCAHLASD IIFTVKDDNP
101: IGATLIGRAY IPVDQVINGE EVDQWVEILD NDRNPIQGGS KIHVKLQYFH VEEDRNWNMG IKSAKFPGVP YTFFSQRQGC KVSLYQDAHI PDNFVPRIPL
201: AGGKNYEPQR CWEDIFDAIS NAKHLIYITG WSVYAEIALV RDSRRPKPGG DVTIGELLKK KASEGVRVLL LVWDDRTSVD VLKKDGLMAT HDEETENFFR
301: GSDVHCILCP RNPDDGGSIV QSLQISTMFT HHQKIVVVDS EMPSRGGSEM RRIVSFVGGI DLCDGRYDTP FHSLFRTLDT VHHDDFHQPN FTGAAITKGG
401: PREPWHDIHS RLEGPIAWDV MYNFEQRWSK QGGKDILVKL RDLSDIIITP SPVMFQEDHD VWNVQLFRSI DGGAAAGFPE SPEAAAEAGL VSGKDNIIDR
501: SIQDAYIHAI RRAKDFIYVE NQYFLGSSFA WAADGITPED INALHLIPKE LSLKIVSKIE KGEKFRVYVV VPMWPEGLPE SGSVQAILDW QRRTMEMMYK
601: DVIQALRAQG LEEDPRNYLT FFCLGNREVK KDGEYEPAEK PDPDTDYMRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPH
701: HLSHRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSLECI EKVNRISDKY WDFYSSESLE HDLPGHLLRY PIGVASEGDI TELPGFEFFP DTKARILGTK
801: SDYLPPILTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)