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AT1G78850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17151019
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24012629 (2013): nucleus
  • PMID:22430844 (2012): Golgi
  • PMID:21166475 (2011): cytosol
  • PMID:21109274 (2011): extracellular region
  • PMID:19825673 (2009): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
Curator
Summary (TAIR10)
curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein
Computational
Description (TAIR10)
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: phloem, stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 2743 Blast hits to 2677 proteins in 112 species: Archae - 0; Bacteria - 63; Metazoa - 5; Fungi - 0; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMUCeggNOG:ENOG410YGSVEMBL:AC005679EMBL:AY054501
EMBL:CP002684EnsemblPlants:AT1G78850EnsemblPlants:AT1G78850.1entrez:844222
Gene3D:2.90.10.10GeneID:844222GO:GO:0005618GO:GO:0005774
GO:GO:0005794GO:GO:0005829GO:GO:0009505GO:GO:0030246
GO:GO:0048046Gramene:AT1G78850.1hmmpanther:PTHR32444hmmpanther:PTHR32444:SF13
IntAct:Q9ZVA4InterPro:IPR001480InterPro:IPR003609KEGG:ath:AT1G78850
OMA:DSGSKFNPfam:PF01453Pfscan:PS50927Pfscan:PS50948
PhylomeDB:Q9ZVA4PIR:H96817PROSITE:PS50927PROSITE:PS50948
Proteomes:UP000006548RefSeq:NP_178006.1SMART:SM00108SMR:Q9ZVA4
STRING:3702.AT1G78850.1SUPFAM:SSF51110SwissPalm:Q9ZVA4TAIR:AT1G78850
UniGene:At.19832UniGene:At.34227UniGene:At.67011UniGene:At.71597
UniGene:At.71620UniProt:Q9ZVA4
Coordinates (TAIR10) chr1:-:29642072..29643397
Molecular Weight (calculated) 49053.80 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.32
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFSITLALC FTLSIFLIGS QAKVPVDDQF RVVNEGGYTD YSPIEYNPDV RGFVPFSDNF RLCFYNTTPN AYTLALRIGN RVQESTLRWV WEANRGSPVK
101: ENATLTFGED GNLVLAEADG RLVWQTNTAN KGAVGIKILE NGNMVIYDSS GKFVWQSFDS PTDTLLVGQS LKLNGRTKLV SRLSPSVNTN GPYSLVMEAK
201: KLVLYYTTNK TPKPIAYFEY EFFTKITQFQ SMTFQAVEDS DTTWGLVMEG VDSGSKFNVS TFLSRPKHNA TLSFIRLESD GNIRVWSYST LATSTAWDVT
301: YTAFTNADTD GNDECRIPEH CLGFGLCKKG QCNACPSDKG LLGWDETCKS PSLASCDPKT FHYFKIEGAD SFMTKYNGGS STTESACGDK CTRDCKCLGF
401: FYNRKSSRCW LGYELKTLTR TGDSSLVAYV KAPNANKKST L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)