AT1G78850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: phloem, stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 2743 Blast hits to 2677 proteins in 112 species: Archae - 0; Bacteria - 63; Metazoa - 5; Fungi - 0; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29642072..29643397 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49053.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFSITLALC FTLSIFLIGS QAKVPVDDQF RVVNEGGYTD YSPIEYNPDV RGFVPFSDNF RLCFYNTTPN AYTLALRIGN RVQESTLRWV WEANRGSPVK 101: ENATLTFGED GNLVLAEADG RLVWQTNTAN KGAVGIKILE NGNMVIYDSS GKFVWQSFDS PTDTLLVGQS LKLNGRTKLV SRLSPSVNTN GPYSLVMEAK 201: KLVLYYTTNK TPKPIAYFEY EFFTKITQFQ SMTFQAVEDS DTTWGLVMEG VDSGSKFNVS TFLSRPKHNA TLSFIRLESD GNIRVWSYST LATSTAWDVT 301: YTAFTNADTD GNDECRIPEH CLGFGLCKKG QCNACPSDKG LLGWDETCKS PSLASCDPKT FHYFKIEGAD SFMTKYNGGS STTESACGDK CTRDCKCLGF 401: FYNRKSSRCW LGYELKTLTR TGDSSLVAYV KAPNANKKST L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)