AT1G33590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, response to karrikin, defense response; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33600.1); Has 74647 Blast hits to 28620 proteins in 1034 species: Archae - 16; Bacteria - 6743; Metazoa - 19007; Fungi - 704; Plants - 43140; Viruses - 2; Other Eukaryotes - 5035 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12177788..12179221 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51744.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSSFTLFIF TFVIFLQCLN PTGAATCHPD DEAGLLAFKA GITRDPSGIL SSWKKGTACC SWNGVTCLTT DRVSALSVAG QADVAGSFLS GTLSPSLAKL 101: KHLDGIYFTD LKNITGSFPQ FLFQLPNLKY VYIENNRLSG TLPANIGALS QLEAFSLEGN RFTGPIPSSI SNLTLLTQLK LGNNLLTGTI PLGVANLKLM 201: SYLNLGGNRL TGTIPDIFKS MPELRSLTLS RNGFSGNLPP SIASLAPILR FLELGHNKLS GTIPNFLSNF KALDTLDLSK NRFSGVIPKS FANLTKIFNL 301: DLSHNLLTDP FPVLNVKGIE SLDLSYNQFH LNTIPKWVTS SPIIFSLKLA KCGIKMSLDD WKPAQTFYYD FIDLSENEIT GSPARFLNQT EYLVEFKAAG 401: NKLRFDMGKL TFAKTLTTLD ISRNLVFGKV PAMVAGLKTL NVSHNHLCGK LPVTKFPASA FVGNDCLCGS PLSPCKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)