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AT1G25275.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AK317273EMBL:CP002684EnsemblPlants:AT1G25275EnsemblPlants:AT1G25275.1
entrez:839111ExpressionAtlas:B9DGT3GeneID:839111Gramene:AT1G25275.1
hmmpanther:PTHR37183HOGENOM:HOG000090028PhylomeDB:B9DGT3Proteomes:UP000006548
RefSeq:NP_564227.1TAIR:AT1G25275TMHMM:TMhelixUniGene:At.43918
UniProt:B9DGT3
Coordinates (TAIR10) chr1:+:8860719..8861156
Molecular Weight (calculated) 7799.63 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.04
Length 74 amino acids
Sequence (TAIR10)
(BLAST)
1: MMKKQVTIVA ALLIMMALCS SLNMVAEAQL GPGDCYDGCS TACVQRDPRK TSRCDRKCSI RCGPDAARAS GSGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)