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AT4G25900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25805245 (2015): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region plant-type cell wall
  • PMID:22923678 (2012): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20061580 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16618929 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose mutarotase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1745-MONOMEReggNOG:COG0676eggNOG:KOG1594EMBL:AY054654
EMBL:AY081509EMBL:CP002687EnsemblPlants:AT4G25900EnsemblPlants:AT4G25900.1
entrez:828696Gene3D:2.70.98.10GeneID:828696GO:GO:0005618
GO:GO:0005886GO:GO:0005975GO:GO:0009505GO:GO:0016853
GO:GO:0030246Gramene:AT4G25900.1hmmpanther:PTHR11122hmmpanther:PTHR11122:SF11
HOGENOM:HOG000283048InterPro:IPR008183InterPro:IPR011013InterPro:IPR014718
InterPro:IPR025532KEGG:ath:AT4G25900KO:K01792OMA:IDKTREG
Pfam:PF01263PhylomeDB:Q940G5PIRSF:PIRSF016020Proteomes:UP000006548
RefSeq:NP_567734.1SMR:Q940G5STRING:3702.AT4G25900.1SUPFAM:SSF74650
TAIR:AT4G25900TMHMM:TMhelixUniGene:At.2909UniProt:Q940G5
Coordinates (TAIR10) chr4:+:13161487..13163397
Molecular Weight (calculated) 36253.50 Da
IEP (calculated) 10.25
GRAVY (calculated) -0.39
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGNKRNLGF VIFFWALVVA VVATAIEHRR NERTKGVNGL DKIIIRDRRG RSAEVYLYGG QVSSWKNENG EELLVMSSKA IFQPPTPIRG GIPVLFPQYS
101: NTGPLPSHGF VRQRFWEVET KPPPLPSLST AHVDLIVRSS NEDLKIWPHK FEYRLRVALG HDGDLTLTSR VKNTDTKPFN FTFALHPYFA VSNISEIHVE
201: GLHNLDYLDQ QKNRTRFTDH EKVITFNAQL DRLYLSTPDQ LRIVDHKKKK TIVVHKEGQV DAVVWNPWDK KVSDLGVEDY KRFVTVESAA VAKPITVNPG
301: KEWKGILHVS VVPSNRKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)