suba logo
AT3G06300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P4H isoform 2
Curator
Summary (TAIR10)
Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.
Computational
Description (TAIR10)
P4H isoform 2 (AT-P4H-2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, procollagen-proline 4-dioxygenase activity; INVOLVED IN: peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G18900.1); Has 2500 Blast hits to 2478 proteins in 341 species: Archae - 0; Bacteria - 386; Metazoa - 1038; Fungi - 78; Plants - 408; Viruses - 17; Other Eukaryotes - 573 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G06300-MONOMEREC:1.14.11.2eggNOG:ENOG410XS5JeggNOG:KOG1591
EMBL:AC011623EMBL:AK229257EMBL:AY088813EMBL:CP002686
EnsemblPlants:AT3G06300EnsemblPlants:AT3G06300.1entrez:819804GeneID:819804
Genevisible:F4JAU3GO:GO:0000139GO:GO:0004656GO:GO:0005506
GO:GO:0005768GO:GO:0005789GO:GO:0005794GO:GO:0005802
GO:GO:0016021GO:GO:0018401GO:GO:0031418GO:GO:0080147
Gramene:AT3G06300.1hmmpanther:PTHR10869hmmpanther:PTHR10869:SF64HOGENOM:HOG000096858
InParanoid:F4JAU3InterPro:IPR003582InterPro:IPR005123InterPro:IPR006620
KEGG:ath:AT3G06300KO:K00472OMA:LTHDGNCPaxDb:F4JAU3
Pfam:F4JAU3Pfam:PF03171Pfam:PF13640Pfscan:PS51471
Pfscan:PS51670PRIDE:F4JAU3PRO:PR:F4JAU3PROSITE:PS51471
PROSITE:PS51670ProteinModelPortal:F4JAU3Proteomes:UP000006548RefSeq:NP_566279.1
SMART:SM00702SMR:F4JAU3STRING:3702.AT3G06300.1TAIR:AT3G06300
tair10-symbols:AT-P4H-2TMHMM:TMhelixUniGene:At.18613UniProt:F4JAU3
Coordinates (TAIR10) chr3:+:1907744..1909675
Molecular Weight (calculated) 33021.20 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.32
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSRLGLLL FVAILLVLLQ SSTCLISSPS SIINPSKVKQ VSSKPRAFVY EGFLTDLECD HLISLAKENL QRSAVADNDN GESQVSDVRT SSGTFISKGK
101: DPIVSGIEDK LSTWTFLPKE NGEDLQVLRY EHGQKYDAHF DYFHDKVNIA RGGHRIATVL LYLSNVTKGG ETVFPDAQEF SRRSLSENKD DLSDCAKKGI
201: AVKPKKGNAL LFFNLQQDAI PDPFSLHGGC PVIEGEKWSA TKWIHVDSFD KILTHDGNCT DVNESCERWA VLGECGKNPE YMVGTPEIPG NCRRSCKAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)