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AT2G35610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucanase 113
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucanase 113 (XEG113); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G70630.1); Has 390 Blast hits to 386 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
CAZy:GT77EC:2.4.2.-eggNOG:ENOG410IGI8eggNOG:ENOG410ZPDM
EMBL:AC006068EMBL:AK316893EMBL:AY074327EMBL:CP002685
EMBL:KJ138873EnsemblPlants:AT2G35610EnsemblPlants:AT2G35610.1entrez:818128
GeneID:818128Genevisible:Q8VXZ5GO:GO:0000139GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0006486GO:GO:0016021
GO:GO:0052325GO:GO:0052636GO:GO:0080147Gramene:AT2G35610.1
hmmpanther:PTHR10994hmmpanther:PTHR10994:SF69InterPro:IPR005069KEGG:ath:AT2G35610
OMA:EFGPHIDPaxDb:Q8VXZ5Pfam:PF03407PhylomeDB:Q8VXZ5
PIR:G84770ProteinModelPortal:Q8VXZ5Proteomes:UP000006548RefSeq:NP_850250.1
STRING:3702.AT2G35610.1TAIR:AT2G35610tair10-symbols:XEG113TMHMM:TMhelix
UniGene:At.75202UniProt:Q8VXZ5
Coordinates (TAIR10) chr2:-:14947617..14951106
Molecular Weight (calculated) 73217.00 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.23
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEGWRNGFR DATNSKPLFV TIYATVIIGV LVSSFYVFSA IYSPTNGSSS FLSFPPLSTS GRIHSLPQEN ATLELPVAPP PPPQALPPPV LEEAQGNSLG
101: KIWVSPPRDK KMPPLETFKL TKELFGERVK DNVIIVTFGN YAFMDFILTW VKHLTDLDLS NILVGAMDTK LLEALYWKGV PVFDMGSHMS TVDVGWGSPT
201: FHKMGREKVI LIDSVLPFGY ELLMCDTDMV WLKNPMPYLA RFPDADVLTS SDQVVPTVID DSLDIWQQVG AAYNIGIFHW RPTESAKKLA KEWKEILLAD
301: DKVWDQNGFN EIVRRQLGPS VEGDSGLFYA YDGNLKVGIL PASIFCSGHT YFVQAMYQQL RLEPYAVHTT FQYAGTEGKR HRLREGMVFY DPPEYYDSPG
401: GFIAFKPSIP KSLLLDGKHT IESHFILVNH QMKQIRSALA IASLLNRTLV MPPIWCRLDR LWFGHPGTLQ GSMTRQPFIC PLDHVFEVNI MLKELPEEEF
501: GPGIGIREYS FLDNPLLPKQ VKESWLDVQL CQEGKEGCEA SNNTSPSRVL KFPKRSNEDT FKAIFSSFDD VKVIKFSSIE DAFIGFSDKE REERFRRRVK
601: RYVGIWCCEE NKTPGHIYYD MYWDEKPGWK PVPPQTPEED HPPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)