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AT3G01720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.640
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ1BeggNOG:ENOG4111MC0EMBL:AB617523EMBL:AY072107
EMBL:AY096685EMBL:CP002686EnsemblPlants:AT3G01720EnsemblPlants:AT3G01720.1
entrez:821091GeneID:821091GO:GO:0016021GO:GO:0016757
Gramene:AT3G01720.1hmmpanther:PTHR31485hmmpanther:PTHR31485:SF7HOGENOM:HOG000238581
KEGG:ath:AT3G01720OMA:EPPYPREPhylomeDB:Q8VYF9Proteomes:UP000006548
RefSeq:NP_566148.2STRING:3702.AT3G01720.1TAIR:AT3G01720TMHMM:TMhelix
UniGene:At.26757UniProt:Q8VYF9
Coordinates (TAIR10) chr3:-:262412..265608
Molecular Weight (calculated) 91454.30 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.41
Length 802 amino acids
Sequence (TAIR10)
(BLAST)
001: MRWDLITAIV AALVVSVLAD ESGQMAPYRI HTLFSVECQN YFDWQTVGLM HSFLKSGQPG PITRLLSCTD DQKKTYRGMN LAPTFEVPSW SRHPKTGDWY
101: PAINKPVGVL YWLQHSEEAK HVDWVVILDA DMIIRGPIIP WELGAERGRP FAAHYGYLVG CDNLLVRLHT KHPELCDKVG GLLAMHIDDL RVLAPLWLSK
201: TEDVRQDTAH WTTNLTGDIY GKGWISEMYG YSFGAAEAGL KHKINDDLMI YPGYVPREGV EPVLMHYGLP FSIGNWSFTK LDHHEDNIVY DCNRLFPEPP
301: YPREVKIMEP DPSKRRGLIL SLECMNTLNE GLILRHAENG CPKPKWTKYL SFLKSKTFME LTRPKLLAPG SVHILPDQHE PPPIDEFKGT YPKIHTLFST
401: ECTTYFDWQT VGFMHSFRQS GQPGNITRLL SCTDEALKNY KGHDLAPTHY VPSMSRHPLT GDWYPAINKP AAVVHWLHHT NIDAEYVVIL DADMILRGPI
501: TPWEFKAARG RPVSTPYDYL IGCDNDLARL HTRNPEACDK VGGVIIMHIE DLRKFAMYWL LKTQEVRADK EHYGKELTGD IYESGWISEM YGYSFGAAEL
601: NLRHSINKEI MIYPGYVPEP GADYRVFHYG LEFKVGNWSF DKANWRNTDL INKCWAKFPD PPSPSAVHQT DNDLRQRDLL SIECGQKLNE ALFLHHKRRN
701: CPEPGSESTE KISVSRKVGN IETKQTQGSD ETKESSGSSE SEGRFSTLKL WVIALWLISG VGFLVVMLLV FSTRRGRGTT RGKGYRNKRR TSYSNTGFLD
801: TK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)