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AT1G61770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
J domain protein.
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G18140.1); Has 22399 Blast hits to 22393 proteins in 3184 species: Archae - 166; Bacteria - 8830; Metazoa - 4267; Fungi - 2142; Plants - 2270; Viruses - 12; Other Eukaryotes - 4712 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:ENOG410IN6GEMBL:AC005882EMBL:AY080607
EMBL:BT002337EMBL:CP002684EnsemblPlants:AT1G61770EnsemblPlants:AT1G61770.1
entrez:842474Gene3D:1.10.287.110GeneID:842474Genevisible:Q8GUN6
GO:GO:0005783GO:GO:0005789GO:GO:0016021Gramene:AT1G61770.1
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF184HOGENOM:HOG000006433InParanoid:Q8GUN6
InterPro:IPR001623InterPro:IPR018253iPTMnet:Q8GUN6KEGG:ath:AT1G61770
KO:K19371OMA:QPYGREQPaxDb:Q8GUN6Pfam:PF00226
Pfam:Q8GUN6Pfscan:PS50076PhylomeDB:Q8GUN6PIR:E96643
PRIDE:Q8GUN6PRINTS:PR00625PRO:PR:Q8GUN6PROSITE:PS00636
PROSITE:PS50076ProteinModelPortal:Q8GUN6Proteomes:UP000006548RefSeq:NP_176370.2
scanprosite:PS00636SMART:SM00271SMR:Q8GUN6STRING:3702.AT1G61770.1
SUPFAM:SSF46565TAIR:AT1G61770TMHMM:TMhelixUniGene:At.36376
UniProt:Q8GUN6
Coordinates (TAIR10) chr1:+:22810220..22812370
Molecular Weight (calculated) 34953.90 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.50
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPVTERWC LALILLFLSL FVQSSTAIYC GAEDCYALLG VAQDANASDI KRSYYKLSLQ HHPDKNPDPE SRKLFVKIAT AYEILKDNTT RAQYDYAIEH
101: PEEVFYNTAQ YYRAKYGHKS DPRAVLVGLL VVLSAFQYLN NVARYNEAIA TVKRTPAYKN KLKALELERT GGVSNKKKGS KQIDQKLQEE LSNELDLQIK
201: GAEKPSVWEL LGVRFILLPY TIIKLLVWYS SWVWRYKVKK APYSWEDASY LTRRSLSVPA DAWANLDEYR KEDLVQKRLW EKQNLENYFA EMRKESKRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)