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AT5G14030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17151019
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : translocon-associated protein beta (TRAPB) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111KGIeggNOG:KOG3317EMBL:AY039558EMBL:AY085620
EMBL:AY129472EMBL:CP002688EnsemblPlants:AT5G14030EnsemblPlants:AT5G14030.1
EnsemblPlants:AT5G14030.2EnsemblPlants:AT5G14030.3EnsemblPlants:AT5G14030.4entrez:831251
GeneID:831251GO:GO:0005774GO:GO:0005783GO:GO:0005789
GO:GO:0005794GO:GO:0009506GO:GO:0016021Gramene:AT5G14030.1
Gramene:AT5G14030.2Gramene:AT5G14030.3Gramene:AT5G14030.4hmmpanther:PTHR12861
hmmpanther:PTHR12861:SF3HOGENOM:HOG000005874InterPro:IPR008856KEGG:ath:AT5G14030
KO:K13250OMA:HTFVLETPANTHER:PTHR12861Pfam:PF05753
PhylomeDB:Q94BY3PIRSF:PIRSF016400PRO:PR:Q94BY3Proteomes:UP000006548
RefSeq:NP_001119221.1RefSeq:NP_001119222.1RefSeq:NP_001119223.1RefSeq:NP_568293.1
STRING:3702.AT5G14030.1SwissPalm:Q94BY3TAIR:AT5G14030TMHMM:TMhelix
UniGene:At.25428UniProt:Q94BY3
Coordinates (TAIR10) chr5:+:4526878..4528253
Molecular Weight (calculated) 21105.80 Da
IEP (calculated) 10.23
GRAVY (calculated) 0.15
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVAVAKLLI SAMAVFMLVS ASFATSEVPF MVVHKKATLN RLKSGAERVS VSYDIYNQGS SSAYDVTLTD NSWDKKTFEV VNGNTSKSWE RLDAGGILSH
101: SIELEAKVKG VFYGAPAVVT FRIPTKPALQ EAYSTPLLPL DILADKPPTK PLDVAKRLLA KYGSLVSVIS MVVCFIYLVA TPKSNVSKAS SKKKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)