suba logo
AT1G47240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.662
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NRAMP metal ion transporter 2
Curator
Summary (TAIR10)
Member of the NRAMP2 gene family of metal ion transporters.
Computational
Description (TAIR10)
NRAMP metal ion transporter 2 (NRAMP2); FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 3 (TAIR:AT2G23150.1); Has 4906 Blast hits to 4864 proteins in 1503 species: Archae - 114; Bacteria - 3503; Metazoa - 369; Fungi - 260; Plants - 341; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
BioGrid:26352eggNOG:COG1914eggNOG:KOG1291EMBL:AC079677
EMBL:AF141204EMBL:AF410320EMBL:AY102128EMBL:CP002684
EnsemblPlants:AT1G47240EnsemblPlants:AT1G47240.1entrez:841127GeneID:841127
Genevisible:Q9C6B2GO:GO:0005215GO:GO:0006811GO:GO:0016021
GO:GO:0055072Gramene:AT1G47240.1HAMAP:MF_00221hmmpanther:PTHR11706
hmmpanther:PTHR11706:SF46HOGENOM:HOG000152203InParanoid:Q9C6B2InterPro:IPR001046
KEGG:ath:AT1G47240OMA:WARYVLWPANTHER:PTHR11706PaxDb:Q9C6B2
Pfam:PF01566Pfam:Q9C6B2PhylomeDB:Q9C6B2PIR:B96513
PRIDE:Q9C6B2PRINTS:PR00447PRO:PR:Q9C6B2ProteinModelPortal:Q9C6B2
Proteomes:UP000006548Reactome:R-ATH-425410Reactome:R-ATH-917937RefSeq:NP_175157.1
SMR:Q9C6B2STRING:3702.AT1G47240.1TAIR:AT1G47240tair10-symbols:ATNRAMP2
tair10-symbols:NRAMP2TIGRfam:TIGR01197TIGRFAMs:TIGR01197TMHMM:TMhelix
UniGene:At.11477UniGene:At.38662UniProt:Q9C6B2
Coordinates (TAIR10) chr1:-:17309043..17311308
Molecular Weight (calculated) 58420.60 Da
IEP (calculated) 4.79
GRAVY (calculated) 0.46
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)