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AT1G14010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G26690.1); Has 1568 Blast hits to 1566 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 431; Plants - 276; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTBQeggNOG:KOG1691EMBL:AC007576EMBL:AC068197
EMBL:AK117657EMBL:CP002684EnsemblPlants:AT1G14010EnsemblPlants:AT1G14010.1
entrez:837961GeneID:837961GO:GO:0005783GO:GO:0005789
GO:GO:0015031GO:GO:0016021GO:GO:0016192GO:GO:0032580
GO:GO:0033116Gramene:AT1G14010.1hmmpanther:PTHR22811hmmpanther:PTHR22811:SF47
HOGENOM:HOG000160227InParanoid:Q8GYG1InterPro:IPR009038InterPro:IPR015720
KEGG:ath:AT1G14010OMA:DREEEMHPANTHER:PTHR22811PaxDb:Q8GYG1
Pfam:PF01105Pfam:Q8GYG1Pfscan:PS50866PhylomeDB:Q8GYG1
PIR:D86273PRIDE:Q8GYG1PRO:PR:Q8GYG1PROSITE:PS50866
Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_172854.1SMART:SM01190
STRING:3702.AT1G14010.1TAIR:AT1G14010TMHMM:TMhelixUniGene:At.11347
UniGene:At.48185UniProt:Q8GYG1
Coordinates (TAIR10) chr1:-:4800385..4801790
Molecular Weight (calculated) 24156.90 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.16
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MNHRRSSIVL LILSILSPVT LSIRYELLSG HTKCISEEIH ANAMTIGKYS IINPHEDHPL PSSHKVTVRV TSPQGTAYHE SDGVESGQFS FVAVETGDYI
101: SCFSAVDHKP ETTLIIDFDW RTGIHTKDWS NVAKKSQVET MEFEVKKLFE TVNGIHDEMF YLRDREEEMH NLNIATNSKM AWLSFVSLAV CLSVAGLQFW
201: HLKTFFQKKK LI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)