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AT3G20920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31483571 (2020): endoplasmic reticulum endoplasmic reticulum membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocation protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 251 Blast hits to 251 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 63; Plants - 45; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5232eggNOG:KOG2927EMBL:AP001304EMBL:AY056330
EMBL:AY114067EMBL:CP002686EnsemblPlants:AT3G20920EnsemblPlants:AT3G20920.1
entrez:821641ExpressionAtlas:Q9LIH2GeneID:821641GO:GO:0005886
GO:GO:0008565GO:GO:0016021Gramene:AT3G20920.1hmmpanther:PTHR12443
hmmpanther:PTHR12443:SF9InterPro:IPR004728OMA:WTFVKRRPANTHER:PTHR12443
Pfam:PF03839PhylomeDB:Q9LIH2Proteomes:UP000006548RefSeq:NP_566671.1
STRING:3702.AT3G20920.1TAIR:AT3G20920TMHMM:TMhelixUniGene:At.26408
UniGene:At.6206UniProt:Q9LIH2
Coordinates (TAIR10) chr3:-:7328763..7330698
Molecular Weight (calculated) 41946.10 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.41
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKPVGAEKK RVKRSSGSAS TSVRDSGSDS QPRKQAVKKD SFQLFAEKVR DHKGLESRWA VMEQARVEYF RGKDFVSFMK NNPDFKDILE EDKDLDTDDI
101: ANVLLGKNLL VRCDRVTKTL RPGKKKLSTW PAHLEIFRDD QSFSENDAFF AWTFEKRHPL WQTLLSFFWP VLTLAICLFP VYPHRCKLIV LYSCAGILLM
201: ILSLLFVRAV AFGAMWILLG KRVWFFPNIL AEEATLKELF RFWPKKDEEE PPKWTSRLFY TVVAIVVVML LRRHAPDEAA RARYQRRMSN IIDDVLEWSP
301: KLALSGLMEN QQPVNITDAA NNSSDSAGGP DQTEEVDLDE TQGEDLDETQ GKEEAEGWTD SDLKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)