AT4G32130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein of unknown function (DUF2012) | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Protein of unknown function DUF2012 (InterPro:IPR019008); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2012) (TAIR:AT2G25310.1); Has 295 Blast hits to 295 proteins in 131 species: Archae - 0; Bacteria - 8; Metazoa - 141; Fungi - 68; Plants - 50; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:15520345..15522477 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 22564.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.88 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 202 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAPIFRSTSL IAFSLFFFFF ASTLPISSGS EDSYTITGRV RVPASTVIGH AAKFSNIKVI LNGGQHVTFL RPDGYFTFHK VPAGTHLIEV YALGYFFSPV 101: RVDVSARHRG KVQATLTETR RSLTELVLEP LRAEQYYEMR EPFSVMSIVK SPMGLMVGFM VVVVFLMPKL MENIDPEEMK SAQEQMRSQG VPSLTSLLPA 201: SR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)