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AT4G32130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF2012)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Protein of unknown function DUF2012 (InterPro:IPR019008); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2012) (TAIR:AT2G25310.1); Has 295 Blast hits to 295 proteins in 131 species: Archae - 0; Bacteria - 8; Metazoa - 141; Fungi - 68; Plants - 50; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IA7eggNOG:KOG3306EMBL:AL021636EMBL:AL161580
EMBL:AY072335EMBL:AY114611EMBL:CP002687EnsemblPlants:AT4G32130
EnsemblPlants:AT4G32130.1entrez:829345Gene3D:2.60.40.1120GeneID:829345
Genevisible:Q8VY97GO:GO:0005783GO:GO:0005789GO:GO:0016021
GO:GO:0030246Gramene:AT4G32130.1hmmpanther:PTHR13605HOGENOM:HOG000029070
InParanoid:Q8VY97InterPro:IPR013784InterPro:IPR014766InterPro:IPR019008
KEGG:ath:AT4G32130OMA:FRPREEWPaxDb:Q8VY97Pfam:PF09430
Pfam:Q8VY97PhylomeDB:Q8VY97PIR:T04632PRIDE:Q8VY97
PRO:PR:Q8VY97ProteinModelPortal:Q8VY97Proteomes:UP000006548RefSeq:NP_194940.2
STRING:3702.AT4G32130.1SUPFAM:SSF49452TAIR:AT4G32130TMHMM:TMhelix
UniGene:At.31685UniProt:Q8VY97
Coordinates (TAIR10) chr4:-:15520345..15522477
Molecular Weight (calculated) 22564.60 Da
IEP (calculated) 9.88
GRAVY (calculated) 0.18
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPIFRSTSL IAFSLFFFFF ASTLPISSGS EDSYTITGRV RVPASTVIGH AAKFSNIKVI LNGGQHVTFL RPDGYFTFHK VPAGTHLIEV YALGYFFSPV
101: RVDVSARHRG KVQATLTETR RSLTELVLEP LRAEQYYEMR EPFSVMSIVK SPMGLMVGFM VVVVFLMPKL MENIDPEEMK SAQEQMRSQG VPSLTSLLPA
201: SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)