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AT5G01430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.462
vacuole 0.452
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Got1/Sft2-like vescicle transport protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT3G49420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5120eggNOG:KOG1743EMBL:AL132964EMBL:AL161746
EMBL:AY045875EMBL:AY062841EMBL:AY085005EMBL:AY091202
EMBL:BT006534EMBL:CP002686EMBL:CP002688EnsemblPlants:AT3G49420.1
EnsemblPlants:AT5G01430EnsemblPlants:AT5G01430.1EnsemblPlants:AT5G01430.2entrez:824104
entrez:831915GeneID:824104GeneID:831915GO:GO:0016021
GO:GO:0016192Gramene:AT3G49420.1Gramene:AT5G01430.1Gramene:AT5G01430.2
hmmpanther:PTHR21493hmmpanther:PTHR21493:SF9IntAct:Q9SCL4InterPro:IPR007305
KEGG:ath:AT3G49420KEGG:ath:AT5G01430OMA:GDGNRTTPfam:PF04178
PhylomeDB:Q9SCL4PIR:T46220Proteomes:UP000006548RefSeq:NP_001190200.1
RefSeq:NP_190511.1RefSeq:NP_195763.1STRING:3702.AT5G01430.1TAIR:AT3G49420
TAIR:AT5G01430TMHMM:TMhelixUniGene:At.48968UniGene:At.73030
UniProt:Q9SCL4
Coordinates (TAIR10) chr5:-:176797..178010
Molecular Weight (calculated) 15987.20 Da
IEP (calculated) 10.81
GRAVY (calculated) 0.68
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)