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AT1G79940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : endoplasmic reticulum 18718935
AmiGO : mitochondrion 14671022
TAIR : plasma membrane 17317660
TAIR : mitochondrion 14671022
TAIR : endoplasmic reticulum 16618929
TAIR : endoplasmic reticulum 18718935
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DnaJ / Sec63 Brl domains-containing protein
Curator
Summary (TAIR10)
J domain protein localized in ER membrane. Mutants have defective pollen germination.
Computational
Description (TAIR10)
ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT4G21180.1); Has 25269 Blast hits to 23100 proteins in 3289 species: Archae - 158; Bacteria - 9141; Metazoa - 5761; Fungi - 2418; Plants - 2108; Viruses - 143; Other Eukaryotes - 5540 (source: NCBI BLink).
Protein Annotations
BioGrid:29552eggNOG:COG5407eggNOG:KOG0721eggNOG:KOG0951
EMBL:AC009322EMBL:AC011717EMBL:AK227714EMBL:CP002684
EnsemblPlants:AT1G79940EnsemblPlants:AT1G79940.1EnsemblPlants:AT1G79940.2EnsemblPlants:AT1G79940.3
entrez:844334ExpressionAtlas:Q0WT48Gene3D:1.10.287.110Gene3D:2.60.40.150
GeneID:844334Genevisible:Q0WT48GO:GO:0005739GO:GO:0005783
GO:GO:0005794GO:GO:0005886GO:GO:0015031GO:GO:0030176
hmmpanther:PTHR24075hmmpanther:PTHR24075:SF0HOGENOM:HOG000240711InParanoid:Q0WT48
InterPro:IPR000008InterPro:IPR001623InterPro:IPR004179InterPro:IPR014756
iPTMnet:Q0WT48KEGG:ath:AT1G79940KO:K09540OMA:AWVTLKR
PaxDb:Q0WT48Pfam:PF00226Pfam:PF02889Pfam:Q0WT48
Pfscan:PS50076PhylomeDB:Q0WT48PIR:F96830PRIDE:Q0WT48
PRINTS:PR00625PRO:PR:Q0WT48PROSITE:PS50076ProteinModelPortal:Q0WT48
Proteomes:UP000006548Reactome:R-ATH-381038RefSeq:NP_001031306.2RefSeq:NP_001117623.1
RefSeq:NP_178112.2SMART:SM00271SMART:SM00973SMR:Q0WT48
STRING:3702.AT1G79940.1SUPFAM:SSF158702SUPFAM:SSF46565SUPFAM:SSF81296
SwissPalm:Q0WT48TAIR:AT1G79940tair10-symbols:ATERDJ2ATMHMM:TMhelix
UniGene:At.34014UniProt:Q0WT48
Coordinates (TAIR10) chr1:+:30070023..30073237
Molecular Weight (calculated) 76908.40 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.27
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASEENSAL FPIFILTIMA IPLVPYTMVK LSGALSKKQR TIHCQCLECD RSGKYKRSLF KKISNFSTWS NLTLVLLWVV MIFLIYYTKN MSREAQVFDP
101: FSILGLEPGV TDSEIKKAYR RLSIQYHPDK NPDPEANKYF VEFISKAYQA LTDSVSRENF EKYGHPDGRQ GFQMGIALPQ FLLDIDGASG GILLLWIVGV
201: CILLPLVIAV IYLSRSSKYT GNYVMHQTLS AYYYLMKPSL APSKVMEVFT KAAEYMEIPV RRTDDEPLQK LFMSVRSELN LDLKNMKQEQ AKFWKQHPAI
301: VKTELLIQAQ LTRESGVLSP ALQGDFRRVL ELAPRLLEEL LKMAVIPRTA QGHGWLRPAV GVVELSQCIV QAVPLSARKS SGVSSEGISP FLQLPHFSDA
401: VVKKIARKKV KSFQDLQEMR LEDRSELLTQ VAGLSATDVE DIEKVLEMMP SITVDITCET EGEEGIQEGD IVTLQAWVTL KRPNGLVGAL PHAPYFPFHK
501: EENYWVLLAD SVSNNVWFSQ KVSFLDEGGA ITAASKAISE SMEGSGAGVK ETNDAVREAI EKVKGGSRLV MGKLQAPAEG TYNLTCFCLC DTWIGCDKKQ
601: ALKVKVLKRT RAGTRGLVSD EGAIAEEGME EEDEIEEEDY DDDYESEYSE DEDEKKDMDE KRGSKKANGS VKQKKESSSE ESGSEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)