AT4G24330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1682) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1682); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1682 (InterPro:IPR012879); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1682) (TAIR:AT5G49945.1); Has 377 Blast hits to 366 proteins in 149 species: Archae - 0; Bacteria - 16; Metazoa - 149; Fungi - 92; Plants - 46; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12603848..12606229 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53950.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRLFSLFSI ALIAFLCLHH HVLASSSSDF EGFDAEDDDV SEDSTELHHS LRPPLLTQSE STVLDLDPSP DSDSTPASKS DPPTQTVKPS SSISFDYWDE 101: DEFEGLPEDE KSTESPVFSD DASSPADPQT PDLESASETP DTDIPKKMQS YTVEIVCVSI LIGYAINYFT GKRENENLAL AWASKFGLKD TIFEKNFSLL 201: GVGEGEDSPL LLKEATNVFK FYASGRRYCH GLLATLELKS RHDLISRLFN SVVPCKDEIS FEVYMNDEAM DHIVFAMARK KAAKTMHKEL RDLQRFGGMV 301: PSPGGRKWVT EELAVVSESK EVAGDMITDV VLDQVFGDKS FEKFGKYFIS MHFSDQHPGK HRKMLLFKFA LPDIKHMDDM VRLIALIPYY IDLIGRYKLS 401: SQARNKTDGA RQKAAQEAYK ELENVRQEAL QRKKAEKKKI LEEAQAKLSS EALRKKEAKE RARQMKKSMP KVKMSRGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)