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AT3G18780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15722471 (2005): plant-type vacuole
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28611809 (2017): cytosol
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:15574830 (2004): plasma membrane
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin 2
Curator
Summary (TAIR10)
Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.
Computational
Description (TAIR10)
actin 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 8 (TAIR:AT1G49240.1); Has 14997 Blast hits to 14643 proteins in 3016 species: Archae - 6; Bacteria - 12; Metazoa - 5603; Fungi - 5165; Plants - 1589; Viruses - 2; Other Eukaryotes - 2620 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5277eggNOG:KOG0676EMBL:CP002686EnsemblPlants:AT3G18780
EnsemblPlants:AT3G18780.1entrez:821411ExpressionAtlas:F4J8V9GeneID:821411
GO:GO:0005524Gramene:AT3G18780.1hmmpanther:PTHR11937hmmpanther:PTHR11937:SF247
InterPro:IPR004000InterPro:IPR004001InterPro:IPR020902PANTHER:PTHR11937
PaxDb:F4J8V9Pfam:PF00022PRIDE:F4J8V9PRINTS:PR00190
PROSITE:PS00406PROSITE:PS01132ProteinModelPortal:F4J8V9Proteomes:UP000006548
RefSeq:NP_850611.1scanprosite:PS00406scanprosite:PS01132SMART:SM00268
SMR:F4J8V9STRING:3702.AT3G18780.2SUPFAM:SSF53067TAIR:AT3G18780
tair10-symbols:ACT2tair10-symbols:DER1tair10-symbols:ENL2tair10-symbols:LSR2
UniGene:At.23604UniGene:At.24689UniGene:At.67767UniProt:F4J8V9
Coordinates (TAIR10) chr3:+:6475535..6476728
Molecular Weight (calculated) 41234.60 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.13
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVKID QILFRILLHA N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)