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AT3G18060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Nitrous oxide reductase, N-terminal (InterPro:IPR011045), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT2G01330.2); Has 46825 Blast hits to 21434 proteins in 724 species: Archae - 58; Bacteria - 7760; Metazoa - 18076; Fungi - 9371; Plants - 5681; Viruses - 0; Other Eukaryotes - 5879 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQN1eggNOG:KOG0318EMBL:AB020749EMBL:AY062436
EMBL:AY114624EMBL:CP002686EnsemblPlants:AT3G18060EnsemblPlants:AT3G18060.1
entrez:821331Gene3D:2.120.10.30Gene3D:2.130.10.10GeneID:821331
GO:GO:0005829GO:GO:0080008Gramene:AT3G18060.1hmmpanther:PTHR19856
HOGENOM:HOG000162559IntAct:Q9LV35InterPro:IPR001680InterPro:IPR011042
InterPro:IPR011045InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
KEGG:ath:AT3G18060OMA:WDVGANSPfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9LV35PRO:PR:Q9LV35PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548Reactome:R-ATH-114608
RefSeq:NP_188434.2scanprosite:PS00678SMART:SM00320SMR:Q9LV35
STRING:3702.AT3G18060.1SUPFAM:SSF50974SUPFAM:SSF50978TAIR:AT3G18060
UniGene:At.27343UniProt:Q9LV35
Coordinates (TAIR10) chr3:+:6183880..6186788
Molecular Weight (calculated) 66045.00 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.15
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)