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AT2G05170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar protein sorting 11
Curator
Summary (TAIR10)
Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.
Computational
Description (TAIR10)
vacuolar protein sorting 11 (VPS11); FUNCTIONS IN: transporter activity, binding, zinc ion binding; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 11 (InterPro:IPR016528), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 716 Blast hits to 615 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 251; Fungi - 269; Plants - 42; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
BioGrid:465eggNOG:ENOG410XRNZeggNOG:KOG2114EMBL:AC007018
EMBL:AF436824EMBL:AY084412EMBL:BT002698EMBL:CP002685
EnsemblPlants:AT2G05170EnsemblPlants:AT2G05170.1entrez:815065Gene3D:2.130.10.10
Gene3D:3.30.40.10GeneID:815065Genevisible:Q9SJ40GO:GO:0006886
GO:GO:0007033GO:GO:0008270GO:GO:0009705GO:GO:0016192
GO:GO:0030674GO:GO:0030897GO:GO:0031902GO:GO:0043234
Gramene:AT2G05170.1hmmpanther:PTHR23323hmmpanther:PTHR23323:SF24HOGENOM:HOG000216424
InParanoid:Q9SJ40InterPro:IPR000547InterPro:IPR001841InterPro:IPR013083
InterPro:IPR015943InterPro:IPR016024InterPro:IPR016528InterPro:IPR017986
InterPro:IPR024763KEGG:ath:AT2G05170ncoils:CoilOMA:TLAKNPC
PANTHER:PTHR23323:SF24PaxDb:Q9SJ40Pfam:PF00637Pfam:PF12451
Pfam:PF17122Pfam:Q9SJ40Pfscan:PS50089Pfscan:PS50236
PhylomeDB:Q9SJ40PIR:F84465PRIDE:Q9SJ40PRO:PR:Q9SJ40
PROSITE:PS50089PROSITE:PS50236ProteinModelPortal:Q9SJ40Proteomes:UP000006548
RefSeq:NP_027676.1STRING:3702.AT2G05170.1SUPFAM:SSF48371SUPFAM:SSF50978
SUPFAM:SSF57850TAIR:AT2G05170tair10-symbols:ATVPS11tair10-symbols:VPS11
UniGene:At.20597UniProt:Q9SJ40
Coordinates (TAIR10) chr2:+:1870020..1873278
Molecular Weight (calculated) 105719.00 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.25
Length 932 amino acids
Sequence (TAIR10)
(BLAST)
001: MYQLRKFDFF EEKYGGKIPE DVTGDIQCCS SGRGKVVIGS NDGSVSFLDR GVKFDSGFQA HSSSVLFLQH LKQRNFLVTV GEDEQISPQQ SGMCLKVFDL
101: DKVQEEGTSS SAPECIGILR IFTNQFPEAK ITSFLVLEEV PPILLIAIGL DNGCIYCVKG DIARERITRF KLQVDGRSAI TGLGFRMDGQ ALLLFAVTPE
201: SVNLFSMQAQ PPKLQTLDHI GGSVNTVTMS DRSELIVGRP EAVYFYEVDG RGPCWAFEGE KKFMGWFRGY LLCVIDDSKT GNTVFNVYDL RNRLIAYSIV
301: VDKVSNMLCE WGNIILIKAD KSLLCITEKD MESKLDMLFK KNLYTVAINL VQSQHADAAA TANVMRKYGD HLYGKQDFDE AMLQYINTIG YLEPSFVIQK
401: FLDAQRIYNL TNYLEKLHEK GLASKDHTTL LLNCYTKLKD VEKLNTFIRK EDGIGELKFD VETAIRVCRA ANYHEHAMYV AKKAGKHEWY LKILLEDLGN
501: YDEALQYVSS LEPSQAGVTI EQYGKILIEH KPKETIDILM RLCTEQGIPN GVFLSMLPSP VDFITVFVQH PHSLMHFLER YAEIVQDSPA QAEINNTLLE
601: LYLSRDLNFP SISLSENGLD KDLIDHSVAA AVSKADPEKK TNADSKDAME KDCTERQQKG LELLKMAWPS DLEQPLYDVD LAVILCEMNS FKDGLLYLYE
701: KMKFYKEVIA CYMQNHDHEG LIACCKRLGD SSKGGDPSLW ADLLKYFGEI GEDCTKEVKE VLTYIERDDI LPPIIVLQTL AKNPCLTLSV IKDYIARKLE
801: QESKIIEEDR RAVEKYQETT KNMRKEIEDL RTNARIFQLS KCTACTFTLD IPAVHFMCMH SFHQRCLGDN EKECPECAPE YRSVMEMKRS LEQNSKDQDL
901: FFQQVKGSKD GFSVIAEYFG KGIISKTRDA TS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)