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AT4G23640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.895
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23252740 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:23252740 (2013): plasma membrane
  • PMID:30962257 (2019): plastid
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Potassium transporter family protein
Curator
Summary (TAIR10)
Functions as a potassium transporter and is required for the establishment of root tip growth.
Computational
Description (TAIR10)
TINY ROOT HAIR 1 (TRH1); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, unidimensional cell growth, cell tip growth; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: K+ uptake transporter 3 (TAIR:AT3G02050.1); Has 3556 Blast hits to 3482 proteins in 1085 species: Archae - 13; Bacteria - 2504; Metazoa - 1; Fungi - 97; Plants - 823; Viruses - 4; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3158eggNOG:ENOG410J8QBEMBL:AF012658EMBL:AK226593
EnsemblPlants:AT4G23640EnsemblPlants:AT4G23640.1entrez:828464ExpressionAtlas:Q0WVZ0
GeneID:828464GO:GO:0015079GO:GO:0016021Gramene:AT4G23640.1
hmmpanther:PTHR30540hmmpanther:PTHR30540:SF21InterPro:IPR003855iPTMnet:Q0WVZ0
KEGG:ath:AT4G23640KO:K03549OMA:HAHSTHQPaxDb:Q0WVZ0
Pfam:PF02705Pfam:Q9FE38PhylomeDB:Q0WVZ0PRIDE:Q0WVZ0
ProteinModelPortal:Q0WVZ0RefSeq:NP_194095.2STRING:3702.AT4G23640.1TAIR:AT4G23640
tair10-symbols:ATKT3tair10-symbols:KUP4tair10-symbols:TRH1TIGRfam:TIGR00794
TIGRFAMs:TIGR00794TMHMM:TMhelixUniGene:At.2562UniGene:At.70624
UniProt:Q0WVZ0UniProt:Q9FE38
Coordinates (TAIR10) chr4:-:12320476..12324291
Molecular Weight (calculated) 86847.50 Da
IEP (calculated) 9.64
GRAVY (calculated) 0.43
Length 775 amino acids
Sequence (TAIR10)
(BLAST)
001: MADRRNRCNQ ILLLAYQSFG LVFGDLSISP LYVYKCTFYG GLRHHQTEDT IFGAFSLIFW TITLLSLIKY MVFVLSADDN GEGGIFALYA LLCRHARFSL
101: LPNQQAADEE ISTYYGPGDA SRNLPSSAFK SLIERNKRSK TALLVLVLVG TSMVITIGVL TPAISVSSSI DGLVAKTSLK HSTVVMIACA LLVGLFVLQH
201: RGTNKVAFLF APIMILWLLI IATAGVYNIV TWNPSVYKAL SPYYIYVFFR DTGIDGWLSL GGILLCITGT EAIFAELGQF TATSIRFAFC CVVYPCLVLQ
301: YMGQAAFLSK NFSALPSSFY SSIPDPFFWP VLMMAMLAAM VASQAVIFAT FSIVKQCYAL GCFPRVKIVH KPRWVLGQIY IPEINWVVMI LTLAVTICFR
401: DTRHIAFAFG LACMTLAFVT TWLMPLIINF VWNRNIVFSV LFILFFGTIE LIFVASALVK IPKGGWITLL LSLFFTFITY VWHYGSRKKY LCDQHNKVPM
501: KSILSLGPSL GIIKVPGMGL IYTELASGVP ATFKHFLTNL PAFYQVVVFV CCKTVPIPYV PQKERYLIGR IGPKTYRMYR CIIRAGYKDV NKDGDDFEDE
601: LVMSIAEFIQ LESEGYGGSN TDRSIDGRLA VVKASNKFGT RLSRSISEAN IAGSSRSQTT VTNSKSPALL KLRAEYEQEL PRLSMRRMFQ FRPMDTKFRQ
701: PQVKEELFDL VNAKDAEVAY IVGHGHVKAK RNSVFVKQLV VNVAYSFLRK NCRSPGVMLN IPHICLIKVG MNYYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)