AT4G38640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plasma-membrane choline transporter family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18059884..18062091 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62148.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.60 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||
| Length | 556 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAADDGDPTK FAAIYDSSSP SHPLLSKPST SALDSPRRSD PESDPTQFLQ ISYNFGPRTF KDIPFLLLFD LLVLSTFGFG IFSIFHRNND YGNSSSFTYD 101: FTSSSCVKNS TFTKISDGYY WASSSVMYGM VSSSDPVFEK DLIWTLVVTL ILSVPFCFSV LLLLKHYTKQ IVYACLPLFV LFPIFFNVYW FVACTLSSSC 201: SDALPLAYRI LVLVFVFLII GIIVWIIVAN WHRIDLTIQI ISVASDALSK NLKLFVVLPL LTLGLVVYYA PIVVFLVFAR FNGKFVPREL DGQYFCEWKE 301: DSWVPAYYAL AILTMIWSLA VMVEMQVYVI SGAIAQWYFS KEDSIPKKCI RSSLRNAFGQ SFGTICVSGL LICIVRVVRA IVDNAREENT QGIVNMVLRC 401: CANALLGALD YLNKFTINFA AITGEAYCTS AKMTYELLRR NLLSAVFVET VSTRILTGIV FVLSAAYAVA TWAVLRGVSN LGIDSYVVAV LAWVLLIVIL 501: AFFVHVLDDV IDTIYVCYAI DRDKGDVCKQ EVHEVYVHLP ISRSTRSSLI PNALNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)