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AT3G49880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.549
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase family protein 43
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: Arabinanase/levansucrase/invertase (TAIR:AT5G67540.2); Has 1254 Blast hits to 1248 proteins in 224 species: Archae - 2; Bacteria - 1011; Metazoa - 1; Fungi - 133; Plants - 55; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G49880-MONOMERCAZy:GH43eggNOG:ENOG410IIKEeggNOG:ENOG410XS3S
EMBL:AL132965EMBL:AY063986EMBL:AY096730EMBL:CP002686
EnsemblPlants:AT3G49880EnsemblPlants:AT3G49880.1entrez:824150Gene3D:2.115.10.20
GeneID:824150GO:GO:0004553GO:GO:0005975GO:GO:0016021
Gramene:AT3G49880.1hmmpanther:PTHR22925hmmpanther:PTHR22925:SF32HOGENOM:HOG000238532
InterPro:IPR006710InterPro:IPR023296KEGG:ath:AT3G49880OMA:PTNVTHD
PANTHER:PTHR22925Pfam:PF04616Pfscan:PS51257PhylomeDB:Q9M2X0
PIR:T46054Proteomes:UP000006548RefSeq:NP_190557.1SMR:Q9M2X0
STRING:3702.AT3G49880.1SUPFAM:SSF75005TAIR:AT3G49880TMHMM:TMhelix
UniGene:At.27118UniProt:Q9M2X0
Coordinates (TAIR10) chr3:+:18496907..18498398
Molecular Weight (calculated) 53253.40 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.42
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVMKNKHNK KATFLRCSPF GLVSTVVGCV FMIHLTMLYS RSYSVDLDLS PQLLIHHPIV RELERVEEEN IHMPPPRKRS PRAIKRKPKT PTTLVEEFLD
101: ENSQIRHLFF PDMKSAFGPT KEDTNDTSHY YFPGRIWTDT EGNPIQAHGG GILFDDISKV YYWYGEYKDG PTYLSHKKGA ARVDIIGVGC YSSKDLWTWK
201: NEGVVLAAEE TDETHDLHKS NVLERPKVIY NSDTGKYVMW MHIDDANYTK ASVGVAISDN PTGPFDYLYS RSPHGFDSRD MTVYKDDDNV AYLIYSSEDN
301: SVLHIGPLTE NYLDVKPVMK RIMVGQHREA PAIFKHQNTY YMITSGCTGW APNEALAHAA ESIMGPWETL GNPCVGGNSI FRSTTFFAQS TFVIPLPGVP
401: GVFIFMADRW NPADLRDSRY LWLPLIVGGP ADRPLEYSFG FPMWSRVSVY WHRQWRLPSA REKKIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)