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AT1G28340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.940
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 4 (RLP4); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Leucine-rich repeat domain (TAIR:AT1G25570.1); Has 80698 Blast hits to 16677 proteins in 704 species: Archae - 13; Bacteria - 1525; Metazoa - 2886; Fungi - 292; Plants - 72469; Viruses - 0; Other Eukaryotes - 3513 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G28340
EnsemblPlants:AT1G28340.1entrez:839730Gene3D:3.80.10.10GeneID:839730
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016021
Gramene:AT1G28340.1hmmpanther:PTHR27003hmmpanther:PTHR27003:SF93InParanoid:F4HWL3
InterPro:IPR001611InterPro:IPR024788InterPro:IPR032675iPTMnet:F4HWL3
KEGG:ath:AT1G28340OMA:NKNYSIWPaxDb:F4HWL3Pfam:PF12819
Pfam:PF13855PRIDE:F4HWL3ProteinModelPortal:F4HWL3Proteomes:UP000006548
RefSeq:NP_174156.1SMR:F4HWL3STRING:3702.AT1G28340.1SUPFAM:SSF52058
TAIR:AT1G28340tair10-symbols:AtRLP4tair10-symbols:RLP4TMHMM:TMhelix
UniGene:At.40910UniProt:F4HWL3
Coordinates (TAIR10) chr1:+:9940175..9943252
Molecular Weight (calculated) 68422.60 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.14
Length 626 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLRFILASL LLSSFSLYSS LARPAPYALR ISCGARKNVR TPPTYALWFK DIAYTGGVPA NATTPTYITP PLKTLRYFPI SEGPNNCYNI VRVPKGHYSV
101: RIFFGLVDQP SFDKEPLFDI SIEGTQISSL KSGWSSQDDQ VFAEALIFLL GGTATICFHS TGHGDPAILS IEILQVDDKA YSFGEGWGQG VILRTATRLT
201: CGTGKSRFDE DYRGDHWGGD RFWNRMRSFG KSADSPRSTE ETIKKASVSP NFYPEGLYQS ALVSTDDQPD LTYSLDVEPN RNYSVWLHFA EIDNTITAEG
301: KRVFDVVING DTFFEDVDII KMSGGRYAAL VLNATVTVSG RTLTVVLQPK AGGHAIINAI EVFEIITAEF KTLRDEVSAL QKMKKALGLP SRFGWNGDPC
401: VPPQHPWSGA NCQLDKNTSR WFIDGLDLDN QGLKGFLPND ISKLKHLQSI NLSENNIRGG IPASLGSVTS LEVLDLSYNS FNGSIPETLG ELTSLRILNL
501: NGNSLSGKVP AAVGGRLLHR ASFNFTDNAG LCGIPGLPAC GPHLSSGAKI GIAFGVSLAF LLIVACAMIW WKRRQNILRA QQIAARGAPY AKKRTHVSHD
601: IQMSRHGHNN HGQARTAVEN GPSLLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)