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AT1G25570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.973
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17317660
AmiGO : vacuole 15539469
TAIR : plasma membrane 17317660
TAIR : vacuole 15539469
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Di-glucose binding protein with Leucine-rich repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Di-glucose binding protein with Leucine-rich repeat domain; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 4 (TAIR:AT1G28340.1); Has 39900 Blast hits to 11672 proteins in 418 species: Archae - 2; Bacteria - 388; Metazoa - 87; Fungi - 9; Plants - 38059; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G25570
EnsemblPlants:AT1G25570.1entrez:839144Gene3D:3.80.10.10GeneID:839144
GO:GO:0005768GO:GO:0005773GO:GO:0005794GO:GO:0005802
GO:GO:0005886GO:GO:0016021Gramene:AT1G25570.1hmmpanther:PTHR27003
hmmpanther:PTHR27003:SF5InParanoid:F4ICJ5InterPro:IPR001611InterPro:IPR024788
InterPro:IPR032675iPTMnet:F4ICJ5KEGG:ath:AT1G25570OMA:HPLAYDG
PaxDb:F4ICJ5Pfam:PF12819Pfscan:PS51450PRIDE:F4ICJ5
PROSITE:PS51450ProteinModelPortal:F4ICJ5Proteomes:UP000006548RefSeq:NP_564237.2
SMR:F4ICJ5STRING:3702.AT1G25570.1SUPFAM:SSF52058TAIR:AT1G25570
TMHMM:TMhelixUniGene:At.70414UniProt:F4ICJ5
Coordinates (TAIR10) chr1:-:8992183..8995430
Molecular Weight (calculated) 68976.00 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.02
Length 628 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFSPSFFLF LSSFFLLLHL SLSSPFNTSF FIDCGSPETS TDVFNRTWLP DQFYSGGSTA VVSEPLRFHL IAEKTIRYFP LSFGKKNCYV VPLPPGRYYL
101: RTFTVYDNYD GKSHSPSFDV SVEGTLVFSW RSPWPESLLR DGSYSDLFAF IGDGELDLCF YSIATDPPIV GSLEVLQVDP SSYDADGTGQ NVLLVNYGRL
201: SCGSDQWGPG FTNHTDNFGR SWQSDEDFRS EDSRSVARSL STLEKIKGVD QAPNYFPMKL YQTAVTVSGG GSLVYELEVD AKLDYLLWFH FSEIDSTVKK
301: AGQRVFDLVV NDNNVSRVDV FHEVGGFAAY SLNYTVKNLS STIVTVKLSS VSGAPIISGL ENYAIVPADM ATVPEQVTAM KALKDSLRVP DRMGWNGDPC
401: APTSWDAWEG VSCRPNSQGS ALVIFQIDLG SQGLKGFISE QISLLTNLNS LNLSSNTLSG QLPLGLGHKS LVSLDLSNNQ LTGPIPESLT LSSLKLVLLN
501: GNELQGKVPE EVYSVGVHGG IIDLSGNKGL CGVPSLPTCP LLWENGHLSK GGKIAIAISC VVFLILVFLV IYLCCIWRGR HDYDFAPPHD LTSLAAKRNR
601: YQRQKSLMLL EMESQHAKGM PTLPLNSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)