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AT1G53300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.724
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopetide-repeat thioredoxin-like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tetratricopetide-repeat thioredoxin-like 1 (TTL1); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 2 (TAIR:AT3G14950.1); Has 32097 Blast hits to 15852 proteins in 1300 species: Archae - 552; Bacteria - 6287; Metazoa - 8110; Fungi - 3609; Plants - 2668; Viruses - 128; Other Eukaryotes - 10743 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZSQAeggNOG:KOG0907eggNOG:KOG1124EMBL:AC008007
EMBL:BT006444EMBL:CP002684EnsemblPlants:AT1G53300EnsemblPlants:AT1G53300.1
entrez:841764Gene3D:1.25.40.10Gene3D:3.40.30.10GeneID:841764
Genevisible:Q9MAH1GO:GO:0005623GO:GO:0006970GO:GO:0009651
GO:GO:0009737GO:GO:0009738GO:GO:0009789GO:GO:0045454
Gramene:AT1G53300.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF374HOGENOM:HOG000237654
InParanoid:Q9MAH1InterPro:IPR001440InterPro:IPR011990InterPro:IPR012336
InterPro:IPR013026InterPro:IPR013766InterPro:IPR019734iPTMnet:Q9MAH1
KEGG:ath:AT1G53300OMA:GMACEAYPaxDb:Q9MAH1Pfam:PF00085
Pfam:PF00515Pfam:PF13181Pfam:PF13414Pfam:Q9MAH1
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9MAH1PRIDE:Q9MAH1
PRO:PR:Q9MAH1PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q9MAH1
Proteomes:UP000006548RefSeq:NP_175737.1SMART:SM00028SMR:Q9MAH1
STRING:3702.AT1G53300.1SUPFAM:SSF48452SUPFAM:SSF52833TAIR:AT1G53300
tair10-symbols:TTL1UniGene:At.44044UniProt:Q9MAH1
Coordinates (TAIR10) chr1:+:19879726..19882375
Molecular Weight (calculated) 76119.20 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.39
Length 699 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)