AT2G29510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3527) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3527); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT5G59020.1); Has 3861 Blast hits to 705 proteins in 135 species: Archae - 0; Bacteria - 66; Metazoa - 411; Fungi - 77; Plants - 149; Viruses - 10; Other Eukaryotes - 3148 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12635231..12637838 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93323.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.29 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||
| Length | 839 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MECRLELKKG SCDRPPFVAA EKKVLTKESS KAFTPDKFRD DKRGLSYSDF HREITKKVED VCPKRLENRL KSRIGRTASG ERDLVKYKSY VPSYIKKCDK 101: VEDKSVKAGG VIGSQELRNM QGIDKLMDKH TRSSLSNTST SSSLWTDESS TDSSRGLCAS PFRKKINHPP LQYYLMSSKP GDNFQDLEPP QDNGDTSHSH 201: RRDGQFHQTP RATAVQQNEK KDTDVKIVPK TRTLFSPSKP DSPSCTRIIS KNLAEDFKKK GEKLEERIRN PRVHDLFGKE KPAAVFVPGI VSQKQFIGLS 301: KFYDSKVLLA ERLAESNRKG FTERLAHGKT AVLDSDVGPF RREADGGSKP FLKRISFLSE RSCSAPRSRK AESSPSRSRT LDRRSTETLP KQSDQKPAKV 401: LSERARSISP FRRLSFSIGK SSKNSNTEDA KTPPHLSTAL ISSRAGLDNP SASSFSDSSS FDKTSAANRG RSSPLRRLLD PLIKPKSSHS CRSPEPSLKE 501: APSSQPSSSS FLSRNGKSST VQALFRVTSK NDQPLFTFAV EKEQSITAAT IRKQTLPEKE DYGHKYTFFT VQEVQKKNAK WMNNSRKVQS QEYTSNIVAQ 601: MRVSDPKPLF LAGERSAENL LTREFVLVAS ESQRTNELAA MVIKIPKLTD TTSSTTLGDY FAEVNATVVL PSGVHSLPHK GGPSSLIQRW KSDGSCDCGG 701: WDTGCNLRIL TNQHNKPINP SPTTSDAFKL FFQGGVQENN NQPYLSFTTY REGVYAVEYN TSLSLLQAFS ICIAVNEGRN PLIKTTVEPN TSRVEKKAYG 801: GEMSSIQNEN LKSFSGPIEA EAPARYLSHH PPLSPVGRV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)