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AT4G36290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.595
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : compromised recognition of TCV 1
Curator
Summary (TAIR10)
R-protein-interacting protein that localizes to endosomes and functions in resistance gene–mediated immunity.
Computational
Description (TAIR10)
compromised recognition of TCV 1 (CRT1); CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT4G36280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59357NEC:3.6.-.-eggNOG:NOG252733EMBL:AF360314
EMBL:AK222136EMBL:AL022141EMBL:AL161589EMBL:BT001940
EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36290EnsemblPlants:AT4G36290.1
entrez:829786Gene3D:3.30.565.10GeneID:829786GO:GO:0002230
GO:GO:0003677GO:GO:0003723GO:GO:0004519GO:GO:0005524
GO:GO:0005634GO:GO:0005768GO:GO:0006281GO:GO:0006282
GO:GO:0009626GO:GO:0016568GO:GO:0016887GO:GO:0031047
GO:GO:0031935GO:GO:0034052GO:GO:0051607GO:GO:0090305
GO:GO:1900426GO:GO:1901672Gramene:AT4G36290.1hmmpanther:PTHR23336
hmmpanther:PTHR23336:SF18HOGENOM:HOG000243790IntAct:Q84WV6InterPro:IPR003594
KEGG:ath:AT4G36290ncoils:CoilOMA:MKDNSPAPfam:PF13589
PhylomeDB:Q84WV6PIR:T04598ProteinModelPortal:Q84WV6Proteomes:UP000006548
RefSeq:NP_568000.1SMR:Q84WV6STRING:3702.AT4G36290.1SUPFAM:SSF55874
TAIR:AT4G36290tair10-symbols:CRT1UniGene:At.19026UniProt:Q84WV6
Coordinates (TAIR10) chr4:-:17169669..17173187
Molecular Weight (calculated) 70811.40 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.36
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKNYTVADV VNIDSDSDSD DDNGGVIGMV PSLASLIENQ KVSIADAATV APRETLECRS FWKAGENFVI PSSVTLTAIG MVEHARVHPK FLHSNATSHK
101: WAFGAIAELL DNAVDEIQNG ATVVKIDKIN IVKDNTPALV FQDNGGGMDP NGIRKCMSLG YSSKKSNTTI GQYGNGFKTS TMRLGADAMV FSRSTRGGKS
201: TQSIGLLSYT FLRKTGQDDV IVPMIDFDIS SDSPQPIIYG SPGDWSTNLN ILLKWSPFST MVELLQQFED IGTHGTKVII YNLWLNDEGI YELSFDDDDV
301: DIRLRDENAQ DGKRLHAKTL EVRSHISYRY RHSLRAYISM LYLKKFKNFK IILRGVSVAQ FNIADEFRHP ETIMYKPQAA AVDYAATGIK VGFIKEAPKL
401: PICGFNVYHK NRLIRPFWKV VLEGSTRGNG VMGVLEANFI EPAHDKQDFE RSSLFLRLEA RLKRITSDYW QNHCHIFGYQ TAQIPADKSK RTVIPDQPPT
501: VNTYNPSPLP SDRISHGGPI IREINLSNAT SSRTAAVAAP HLRNYTGLRN NFQPVQLNPQ PPAAGDTGNN LVGKLAAEIR EENLQLFMRC EEYVKKENEV
601: EQTVKSLEKE LEEIKSKCAQ LALLVDAKKK EMQQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)