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AT2G01440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD/DEAH box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1958-MONOMEREC:3.6.4.12EMBL:AC005560EMBL:CP002685
EnsemblPlants:AT2G01440EnsemblPlants:AT2G01440.1entrez:814672Gene3D:3.40.50.300
GeneID:814672GO:GO:0003677GO:GO:0004003GO:GO:0004004
GO:GO:0005524GO:GO:0005739GO:GO:0006281GO:GO:0006310
GO:GO:0009507GO:GO:0010501GO:GO:0033955Gramene:AT2G01440.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF50InParanoid:F4INA9InterPro:IPR001650
InterPro:IPR004609InterPro:IPR011545InterPro:IPR012340InterPro:IPR014001
InterPro:IPR027417iPTMnet:F4INA9KEGG:ath:AT2G01440KO:K03655
OMA:HHFPRTYPaxDb:F4INA9Pfam:PF00270Pfam:PF00271
Pfscan:PS51192Pfscan:PS51194PIR:G84424PRIDE:F4INA9
PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4INA9Proteomes:UP000006548
RefSeq:NP_178253.3SMART:SM00487SMART:SM00490SMR:F4INA9
STRING:3702.AT2G01440.1SUPFAM:SSF50249SUPFAM:SSF52540TAIR:AT2G01440
TIGRfam:TIGR00643TIGRFAMs:TIGR00643UniGene:At.69110UniProt:F4INA9
Coordinates (TAIR10) chr2:-:193950..199056
Molecular Weight (calculated) 108382.00 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.25
Length 973 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVTLSPCS MCCGSRRLRS VIVIQAQRGN WNRIRLSNFF FSKVWNISYR SKHKYSDNLL EQVEKYASAR LENQSKLITK VAALMECDNV DDFIDKKSDE
101: QVKKDLVLAC KRFPSIILGD SRPVELYSNS KSYGESSSIL KTPTDNSFLP TPMHGGWFDP DNLSRTLSSF CPELLQNDDS SDPREDILDD GSSFTSKTAT
201: SEVEATSDDV FAAQRFLATS IDSMPGLSKR HSNQLDSCGF HTMKKLLHHF PRTYADLQNA QVDIEDGQYL IFVGKVLSSK GVRASSSFSF LEVIVSCEVS
301: GRDRTPEDLS HNAEDKAGKS IFLHLKKFFR GTRFTWQPFL NSIQEKHKVG DLVCISGKVK SLRAEDHFEM REYNIDVLKD EEESSHRAQG RPYPIYPSKG
401: GLNPKFLSDV ISRALRVLPA NMDPIPKEIT KVFGLPSLND AYVGIHEPKT LDEADLARKR LIFDEFFYLQ LARLYQMLQS LGTKIEKDVL LEKFRKPVLN
501: SVYIEEWSTL TKSFLKALPY SLTPSQLSAV SEIIWDLKRP VPMNRLLQGD VGCGKTVVAF LACMEVIGSG YQAAFMAPTE LLAIQHYEQC RDLLENMEGV
601: SSKPTIGLLT GSTPAKQSRM IRQDLQSGAI SFIIGTHSLI AEKIEYSALR IAVVDEQQRF GVIQRGKFNS KLYGTSMISK SGSSDSDDTS KADLSMAPHV
701: LAMSATPIPR SLALALYGDI SLTQITGMPL GRIPVETHIF EGNETGIKEV YSMMLEDLKS GGRVYVVYPV IDQSEQLPQL RAASAELEIV TKKFPKYNCG
801: LLHGRMKSDD KEEALNKFRS GETQILLSTQ VIEIGVDVPD ASMMVVMNAE RFGIAQLHQL RGRVGRGTRK SKCLLVGSST NSLKRLNMLG KSSDGFYLAN
901: IDLLLRGPGD LLGKKQSGHL PEFPVARLEI DGNMLQEAHI AALNVLGDSH DLEKFPALKA ELSMRQPLCL LGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)