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AT5G10370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, C2H2-type (InterPro:IPR007087), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT4G01020.1); Has 13101 Blast hits to 12313 proteins in 1655 species: Archae - 17; Bacteria - 3301; Metazoa - 3520; Fungi - 1983; Plants - 1450; Viruses - 719; Other Eukaryotes - 2111 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-233-MONOMEREC:3.6.4.13eggNOG:COG1643EMBL:AL353995
EMBL:CP002688EnsemblPlants:AT5G10370EnsemblPlants:AT5G10370.1entrez:830901
Gene3D:3.30.40.10Gene3D:3.40.50.300GeneID:830901GO:GO:0003676
GO:GO:0005524GO:GO:0008026GO:GO:0008270GO:GO:0009507
Gramene:AT5G10370.1hmmpanther:PTHR18934hmmpanther:PTHR18934:SF140HOGENOM:HOG000084497
InParanoid:F4KGU4InterPro:IPR001650InterPro:IPR001841InterPro:IPR002464
InterPro:IPR002867InterPro:IPR007087InterPro:IPR007502InterPro:IPR011545
InterPro:IPR011709InterPro:IPR013083InterPro:IPR014001InterPro:IPR017907
InterPro:IPR027370InterPro:IPR027417iPTMnet:F4KGU4KEGG:ath:AT5G10370
KO:K12818ncoils:CoilOMA:RECRRLKPaxDb:Q9LX92
Pfam:PF00097Pfam:PF00270Pfam:PF00271Pfam:PF01485
Pfam:PF04408Pfam:PF07717Pfam:PF13445Pfscan:PS50089
Pfscan:PS51192Pfscan:PS51194PIR:T50002PRIDE:F4KGU4
PROSITE:PS00518PROSITE:PS00690PROSITE:PS50089PROSITE:PS51192
PROSITE:PS51194ProteinModelPortal:F4KGU4Proteomes:UP000006548RefSeq:NP_196599.2
scanprosite:PS00028scanprosite:PS00518scanprosite:PS00690SMART:SM00487
SMART:SM00490SMART:SM00647SMART:SM00847STRING:3702.AT5G10370.1
SUPFAM:SSF52540SUPFAM:SSF57850TAIR:AT5G10370UniGene:At.49004
UniProt:F4KGU4
Coordinates (TAIR10) chr5:+:3261245..3267188
Molecular Weight (calculated) 201373.00 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.32
Length 1775 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)